BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929147
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13820.1 | Symbols: | F-box and associated interaction doma... 1528 0.0
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 71.3 2e-11
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 71.3 2e-11
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 62.1 1e-08
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 60.2 5e-08
AT3G22770.1 | Symbols: | F-box associated ubiquitination effec... 58.4 2e-07
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 54.7 2e-06
AT3G25090.1 | Symbols: | F-box associated ubiquitination effec... 54.7 2e-06
AT3G49520.1 | Symbols: | F-box and associated interaction doma... 54.7 2e-06
AT5G41490.1 | Symbols: | F-box associated ubiquitination effec... 52.8 8e-06
> AT3G13820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4549616-4550863 FORWARD LENGTH=1248
Length=1248
Score = 1528 bits (827), Expect = 0.0
Identities = 1136/1278 (89%), Gaps = 49/1278 (4%)
Strand=Plus/Plus
Query 25 ATGCCGACGATGCCTAATCTTCC-GCTAGAGGTTTTGGAAGAGAAGATTCTCTCTAGGGC 83
||| |||||||| ||||||| || || ||||||||||| | || |||||||||| ||| |
Sbjct 1 ATGACGACGATGTCTAATCTCCCTGC-AGAGGTTTTGG-A-AG-AGATTCTCTCAAGGAC 56
Query 84 TCCGGTTACATTTCTGAGGGCAATGCGATCTACTTGCAAAAAGTGGAACAATTTCTCAAA 143
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 57 TCCGGTTACATCTCTGAGGACAATGCGATCTACTTGCAAAAAGTGGAACAATCTCTCAAA 116
Query 144 AGAGAAGATTATTCCCGAAGCTGCAAGGAAGCAGCAAGGTTTAATGTTGATCAAAAACAA 203
| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 117 AAAGAAGATTATTCCTGAAGCTGCAAGGAAGCAGCAAGGTTTAATGTTGATTAAAAAGAA 176
Query 204 CATCTGTTCCTTGAGTTTCAGTTTCCAAGGAATCCACAAGGATGACTTTGTCGTTCCGTC 263
||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||
Sbjct 177 AATCTGTTCCTTGAGTTTCAGTCTCCATGAAATTCACAAGGATGACTACGTCGTTCCGT- 235
Query 264 G-ATAAATCAGGTAAATATTCCT-GACCACATCA-AGGTAGATAAAATCTTTCACTGTGA 320
| || |||||||| |||||||| | | |||| | | ||||| |||||||||||||||||
Sbjct 236 GCATTAATCAGGTCGATATTCCTCG-CAACAT-AGAAGTAGAGAAAATCTTTCACTGTGA 293
Query 321 CGGCATATTATTATGTGTTATAGAGAAAAACTCTAGCCTTGTAGTATGGAATCCCTATTT 380
||||||||| ||||| || |||||| | |||| ||| ||| | ||||||||||| ||| |
Sbjct 294 CGGCATATTGTTATGCGTCATAGAGGACAACTGTAGTCTTTTGGTATGGAATCCATATCT 353
Query 381 AGGGCAAACGAGGAGAATCAAAGTCAGTAATGATCCCGACAGGAATGAAAAGTATAGGAG 440
||||||||||||||| ||| | ||||| | | | | | ||| | | | ||
Sbjct 354 AGGGCAAACGAGGAGGATC---G-AAGTAA-G-T-TC--C--G-ATG--CCG-ACATGA- 397
Query 441 ATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGGAT 500
| ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 398 A--TGATAGGTATGCTCTTGGTTACGACAACAACAACAGTAGCCACAAAATCTTGAGGAT 455
Query 501 TATGAAAGATTTTAGGCACAGTGACGGTTTAGGATACGAAATCTACAGATTCGCATCAAA 560
|| ||||||||||| | |||| |||||||||||||||||||||||||||||||| || ||
Sbjct 456 TAAGAAAGATTTTAAGAACAGCGACGGTTTAGGATACGAAATCTACAGATTCGCGTCGAA 515
Query 561 TTCATGGAGTTTGCTTGATGAGGAAGTGATGAAACCCGACTGGAATGTATGGTCTGCTCA 620
|||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||
Sbjct 516 TTCATGGAGTTTGCTTGATGAGGAAGTGATGAAACCAGAGTGGGATGTATGGTCTGTTCA 575
Query 621 ACGAAGCTCCGTGTCTTTGAAGGGAAATACTTATTTCTTTCTTCAAGGGAATGATTATG- 679
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 576 ACGAAGCTCCGTGTCTTTGAAGGGAAATACGTATTTCTTACTTCAAGGGAATGATTATGA 635
Query 680 -G-----GA--ATGAAGAGGACGAAGATGCCGAAGAGTACGAAGATGACGAC-A--TAGT 728
| || | |||||||| ||||||| |||||||||||||||||||||| | | |
Sbjct 636 TGACCAAGAGGACGAAGAGGAGGAAGATGACGAAGAGTACGAAGATGACGACGACGTCCT 695
Query 729 GCCGAAAGATAATTTTTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTCT 788
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 696 GCCGAAAGATAATTTTTTGCTCTGTTTTGATTATACAACAGAGAGATTTGGTCCGCGTCT 755
Query 789 ACTTCTACCGTTTAACCCTCATGTTGAAGAGACCGTGGCTTTATCATGTGTTGGAAAAGA 848
|||||||||||||||||||||||||||||||| ||||||||||| ||| | ||| ||||
Sbjct 756 GCTTCTACCGTTTAACCCTCATGTTGAAGAGACTGTGGCTTTATCTTGTATAGGAGAAGA 815
Query 849 GCGGCTCGCT-ATGCTATATCAAAGCTCCAAGACATCTGAGTCG-ATAGAGATATGGGTA 906
|||||||| | |||||||||||||||| |||||||| | || | |||||||| |||||
Sbjct 816 GCGGCTCG-TAATGCTATATCAAAGCTTCAAGACATATAAG-GGAATAGAGATTTGGGTT 873
Query 907 ACAGATAAGATTGATCCAAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACA 966
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ACAGACAAGATTGATCCGAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACA 933
Query 967 CCACTCACTGGTTTTCCGGTTGACATTTACGCTGATAGTTTCTTCATTGACGAGGAGAAG 1026
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 934 CCACTCACTGGTTTTCCGGTTGACTTTTACGCTGATAGTTTCGTCATTGACGAGGAGAAG 993
Query 1027 AAAGTTGCTGCGGTTGTCGATGTACATTATTGCTACCAAAAAGCTCACATCATTGGAGAA 1086
||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||
Sbjct 994 AAAGTTGCTGCGGTTTTCGATATACATTGTAGCTACCAAAAAGCTCACATCATTGGAGAA 1053
Query 1087 GATGGATACCTGAAATGTGTGAATATGGGAAGAGCTCCGGATGTTGGAAATGGTCAGCCA 1146
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1054 GATGGATACCTGAAATGTGTGAATATGGGAAGAGCTTCGGATGTTGGAAATGGTCAGCCA 1113
Query 1147 CTTGTGTTCTCTTCTTATGTTCCAAGTTTGGTGAAAGTGCCTATcaagcaaccaaagggt 1206
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1114 CTTGTGTTCTCTTCTTATGTTCCAAGTTTAGTGAAAGTTCCTGTCAAGCAACCAAAGGGT 1173
Query 1207 aaaagaaaaggtagagatctaataaaaccaaaagcaa-aacgaacaaaaaaggaagaaag 1265
||||||||||||||| ||| | ||||||||||||| || |||||||||||||||||||
Sbjct 1174 AAAAGAAAAGGTAGA--TCTTCTGAAACCAAAAGCAACAA-GAACAAAAAAGGAAGAAAG 1230
Query 1266 ataaagaTTATTGGTTAA 1283
|| |||||||||||||||
Sbjct 1231 ATTAAGATTATTGGTTAA 1248
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 71.3 bits (38), Expect = 2e-11
Identities = 228/315 (72%), Gaps = 31/315 (10%)
Strand=Plus/Plus
Query 744 TTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTC-TACTTCTACCGTTT- 801
||| |||||||| |||| |||||| |||| |||||||| || || | ||| ||||||||
Sbjct 672 TTTACTCTGTTTTGATTTTACAACGGAGAACTTTGGTCAGCTTCATCCTT-TACCGTTTG 730
Query 802 AACCCTCATGTTGAAGA-GACCGTG-GCTTTATCATGTGTTGGAAAAGAGCGGCTCGCTA 859
| | | || |||| || | | | | ||| | || | | ||||| | ||| |||||
Sbjct 731 AGCAAT-ATATTGACGACG-CTG-GAGCTCTCTCTTCTTTTGGAGAGGAGAAACTCGCGG 787
Query 860 TGCTATATCAAAGC-TC-CAAGACATCTGAGTCGATAGAGATATGGGTAAC-AGATAAGA 916
| ||| ||| ||| || | || | | ||| | | ||||| ||||| || || || ||
Sbjct 788 CGTTATTTCAGAGCTTCGCTAG---T-TCAGTTG-TGGAGATTTGGGTTACAAG-TATGA 841
Query 917 TTGA-TCCAAAAGCGGTGTCGTGGAGCAAGTTTC-TGAAAGTGGATATCACACCACTCAC 974
|||| || || || |||||||||| | |||| | ||||| ||||| | |||| |||
Sbjct 842 TTGAGGCC-AATGCAGTGTCGTGGATC-CCTTTCTTAAAAGTTGATATGAAACCA--CAC 897
Query 975 TG--GTTTTC-----CGGTTGACATTT-ACGCTGATAGTTTCTTCATTGACGAGGAGAAG 1026
|| |||||| || ||| | ||| ||| || ||||||||||||||||||||||||
Sbjct 898 TGTAGTTTTCGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAG 957
Query 1027 AAAGTTGCTGCGGTT 1041
||||| || | ||||
Sbjct 958 AAAGTCGCCGTGGTT 972
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 71.3 bits (38), Expect = 2e-11
Identities = 226/313 (72%), Gaps = 28/313 (9%)
Strand=Plus/Plus
Query 744 TTTGCTCTGTTTCGATTATACAACAGAGAGCTTTGGTCCGCGTCTACTTCTACCGTTTAA 803
||| |||||||| |||| |||||||||||| ||||| ||| || | | ||| | |||| |
Sbjct 733 TTTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTTTA 792
Query 804 CCCT-CATGT--T-G--AAGAGACCGTGGCTTTATCATGTGTTGGAAAAGAGCGGCTCGC 857
|||| | ||| | | || || ||| || |||| || ||| || | ||| ||||||
Sbjct 793 CCCTCCCTGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGC 852
Query 858 TATGCTATATCAAAGCTCCAAG--ACATCTGAG-TCGATAGAGA-TATGGGTAACAGA-T 912
| || |||| | || | | | | ||| ||||| | ||||||| || || | | || |
Sbjct 853 TGTGTTATA-C-AACCACTACGTCACAGCTGAGAT-TATAGAGATTA-GGATTTC-GACT 907
Query 913 AAGATTGATCCAAAAGCGGTGTCGTGGAGCAAGTTTCTGAAAGTGGATATCACACCACTC 972
|||||||| || || ||||| || |||||| ||| ||| |||||||| ||| | ||
Sbjct 908 AAGATTGAACCCAATGCGGTATCCTGGAGCTCTTTTTTGACTGTGGATATGTCACTAGTC 967
Query 973 ACTGGTTTTCCGG-------TT-GA--CA-TTT-ACGCTGATAGTTTCTTCATTGACGAG 1020
| |||||| |||| || || | ||| | ||| | || |||||||||||||||
Sbjct 968 AATGGTTTACCGGATCATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATTGACGAG 1027
Query 1021 GAGAAGAAAGTTG 1033
|||||||||||||
Sbjct 1028 GAGAAGAAAGTTG 1040
Score = 63.9 bits (34), Expect = 4e-09
Identities = 52/60 (87%), Gaps = 3/60 (5%)
Strand=Plus/Plus
Query 439 AGATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGG 498
|||| ||| | || ||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 470 AGATATGACAGGTTTGCTCTTGGATACG---ACAACAACCGTAACCACAAAATCTTGAGG 526
Score = 63.9 bits (34), Expect = 4e-09
Identities = 52/60 (87%), Gaps = 3/60 (5%)
Strand=Plus/Plus
Query 439 AGATGTGATATGTATGCTCTTGGTTACGACAACAACAACCGTAACCACAAAATCTTGAGG 498
|||| ||| ||| ||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1277 AGATATGACGTGTTTGCTCTTGG--AC-ACGACAACAACCGTAACCACAAAATCTTGAGG 1333
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 62.1 bits (33), Expect = 1e-08
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTGCGGTT 1041
||||||||||||||||||||||||||||| |||| ||||
Sbjct 999 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTGTGGTT 1037
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 60.2 bits (32), Expect = 5e-08
Identities = 83/106 (78%), Gaps = 10/106 (9%)
Strand=Plus/Plus
Query 931 GTGTCGTGGAGCAAGTTTCT-G-AAAGTGGATATCAC-ACCACTCACTGGTTTTCCGGTT 987
||||||||||||||| | || | ||| |||||| || |||| | ||| | ||| ||
Sbjct 469 GTGTCGTGGAGCAAGAT-CTTGGAAA-TGGATA-CAGGACCATTGGCTGACATGCCGATT 525
Query 988 GACAT-T-TACGCTGATAGTTTCTTCATTGACGAGGAGAAGAAAGT 1031
| ||| | ||| || |||||||||||||||||||||||||||||
Sbjct 526 G-CATATATACA-TGGGAGTTTCTTCATTGACGAGGAGAAGAAAGT 569
> AT3G22770.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8047684-8048667 REVERSE LENGTH=984
Length=984
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGTTGCTG 1036
||||||||||||||||||||||||||||| ||||
Sbjct 799 AGTTTCTTCATTGACGAGGAGAAGAAAGTCGCTG 832
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGT 1031
|||||||||||||||||||||||||||||
Sbjct 430 AGTTTCTTCATTGACGAGGAGAAGAAAGT 458
> AT3G25090.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:9140039-9141094 REVERSE LENGTH=978
Length=978
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1003 AGTTTCTTCATTGACGAGGAGAAGAAAGT 1031
|||||||||||||||||||||||||||||
Sbjct 742 AGTTTCTTCATTGACGAGGAGAAGAAAGT 770
> AT3G49520.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18359584-18360750 FORWARD LENGTH=1167
Length=1167
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 470 ACAACAACCGTAACCACAAAATCTTGAGG 498
|||||||||||||||||||||||||||||
Sbjct 446 ACAACAACCGTAACCACAAAATCTTGAGG 474
> AT5G41490.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:16600445-16601608 FORWARD LENGTH=1164
Length=1164
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1005 TTTCTTCATTGACGAGGAGAAGAAAGTT 1032
||||||||||||||||||||||||||||
Sbjct 948 TTTCTTCATTGACGAGGAGAAGAAAGTT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5