BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929149
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11810.1 | Symbols: | F-box associated ubiquitination effec... 464 8e-130
AT3G13830.1 | Symbols: | F-box and associated interaction doma... 449 2e-125
AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 111 1e-23
AT3G49520.1 | Symbols: | F-box and associated interaction doma... 82.4 1e-14
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 52.8 8e-06
> AT1G11810.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:3989763-3991066 FORWARD LENGTH=1304
Length=1304
Score = 464 bits (251), Expect = 8e-130
Identities = 549/681 (81%), Gaps = 68/681 (10%)
Strand=Plus/Plus
Query 21 ATGACGACGACGATGTCAAATCTTCCAGAGGTTTTGGTAGAAGAGATTATCTCCAGGGTT 80
||||||||||||||||||| ||||||| |||||||||||| |||||| || | ||||||
Sbjct 1 ATGACGACGACGATGTCAACCCTTCCAGTGGTTTTGGTAGACGAGATTCTCGCTAGGGTT 60
Query 81 CCCATTACATCTCTTGGATCATTCCGATCAAGC-TGTAAAAAATGGGAGGCTTTATCGAA 139
||||||||||||||| ||||| ||||||||| | || || ||||||||||||| ||||||
Sbjct 61 CCCATTACATCTCTTAGATCACTCCGATCAA-CGTGCAAGAAATGGGAGGCTTCATCGAA 119
Query 140 AACCCATCTTTTAGGTGGTAAAGCAGCAGAAGTAACCACAAGG--AAGCAGTTAC-TAGG 196
|||| ||||| |||||||| || ||| |||| ||||| ||||||| || ||||
Sbjct 120 AACCAATCTTGTAGGTGGT-AA--AGC------AACCGCAAGGAAAAGCAGTCACGTAGG 170
Query 197 GTTTATCCT-AGTTGATGACAAGATCTGTTCGATGAAACTCGATCTACATGGAATCACCA 255
||||||||| | ||| ||||||||||||||| ||| || | | ||| | | | |
Sbjct 171 GTTTATCCTCA-TTGGTGACAAGATCTGTTCAATG-AA---G-----C-TGG-A-C-CTA 216
Query 256 AA-GACGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTGCACTTGATCTTGAT 314
|| | ||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 217 AATGGCGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTG--C---AT-TTGAT 270
Query 315 GAATT-GTCGATATCTCAAATCTTTCACTGCGACGGCTTATTGCTATGC--GT-C--T-- 366
| ||| | ||||||||||| ||||||||||||||||||||||| | ||| | | |
Sbjct 271 GGATTCG-CGATATCTCAACTCTTTCACTGCGACGGCTTATTGTTTTGCATCTCCAATAA 329
Query 367 ----T-CAGC-A--AGAGGCTCATGGTGTGTAACATGTACTTGGGACAAACGAGGTTTA- 417
| |||| | | | ||||||||| ||||||||||||||||| |||| ||||| |
Sbjct 330 CCACTACAGCAACTACACGCTCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGAT 389
Query 418 TCAAACCCCGTCGCTTGTTCGAGAGAT-TCGATAAATCAGGCGT-GTATGCTTTCGGATA 475
||||| |||| ||||||||||||| | || | || | || | |||||||||||| |
Sbjct 390 TCAAA-ACCGTAGCTTGTTCGAGAGTTATC-AGAACTTTTGC-TCGTATGCTTTCGG--A 444
Query 476 TGATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAACAAGTCTGTTGGTGGTGG 535
| |||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 445 T-ATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAATAATTCTGTTTCTGGTGG 503
Query 536 TTACGAAATCTATAATTTCAGATCCGATTCATGGAAGGTTCTTAATGTTGATCTCGAAGA 595
||| |||||||| | ||| | ||||||||||||||| | |||||||||||||||||| ||
Sbjct 504 TTATGAAATCTACAGTTTAAAATCCGATTCATGGAAAGATCTTAATGTTGATCTCGA-GA 562
Query 596 AGAT--ACACAGCTT-GATCAACAAGGAAGCTTGTCTTTGAAGGGAAATGCTTACTTTTT 652
| || | ||| ||| | | || ||||||| ||||||||||||||||||||||||||
Sbjct 563 A-ATCTATACATCTTTGG-CGACTAGGAAGCGTGTCTTTGAAGGGAAATGCTTACTTTCG 620
Query 653 GGTGACAAAGACATTTGAAGA 673
||| | |||| | |||||||
Sbjct 621 GGTTATAAAGGTAATTGAAGA 641
Score = 446 bits (241), Expect = 3e-124
Identities = 416/498 (84%), Gaps = 21/498 (4%)
Strand=Plus/Plus
Query 734 TTTACTCTGTTTTGACTTCACAACAGAGAGATTTGGACAGCTTCTGTCTCTGCCGTTTCA 793
||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| |
Sbjct 660 TTTACTCTGTTTTGACTTCACAAGAGAGAGTTTTGGAAAGCTTCTGTCTCTGCCGTTTGA 719
Query 794 CTCTGAAGTT-GATGATGACGGAGTTCGAGAAGACAATGTGGTTTTATCTTGTGTTAGAG 852
||| || | |||||| || |||||| || | ||||| |||||||||||||||
Sbjct 720 GTCT----TTGGGTGATGA---AG---GAGAAGGCATTATGGTTATATCTTGTGTTAGAG 769
Query 853 ATGAGCAGCTTGCCGTGTTACATCAAAGTGACACGACAATAGGTATTTGGATTTCCACTG 912
|||| || ||||| |||||| ||||| ||| || || |||||||||||||||| ||||
Sbjct 770 ATGATCATCTTGCTGTGTTATATCAACGTG--AC-ACTTTAGGTATTTGGATTTCGACTG 826
Query 913 AGATCGAGCCCAATGCGGTGTCGTGGAGAGAGTTTTTGGAAGTGGACTTGACGACGGTTG 972
||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 827 AGATCGAGCCCAACAAGGTGTCGTGGAGAGAGTTTTTGCAAGTGGACTTGGCGACGCTGG 886
Query 973 ATGGTTTTCCGGATG-ACTTCAAAGCTGGGAGCTTCTTCGTTGACGAGGAGAAGCAAGTC 1031
||||||||||||||| | || | ||||||||| ||| |||||||||||||||||||||||
Sbjct 887 ATGGTTTTCCGGATGTA-TTTATAGCTGGGAGATTCATCGTTGACGAGGAGAAGCAAGTC 945
Query 1032 GCCGTAGTTTTTGATCAAGAGACCGAGGCCGG-TGGCAACCAC--ACA-GCTTGCATCAT 1087
| |||||||| | ||||||||| ||| || | ||||||| | | |||| |||| |
Sbjct 946 GTTGTAGTTTTCGGTCAAGAGACAGAGTT-GGATCTCAACCACGGAAATGCTTTCATCTT 1004
Query 1088 TGGAAAAGATGGATACTTCAACTCTGTGAATGTTGGAGATATTCCGCCCCCATACTTCAC 1147
||||| |||||||||||||| |||| | | ||||||||| ||||||| | |||||||
Sbjct 1005 TGGAAGAGATGGATACTTCACCTCTTTTACCGTTGGAGATGCTCCGCCCGAAGACTTCAC 1064
Query 1148 TTCTTATGTTCCAAGCTTAGTGTCATTGCAAATCAAGAAGAAGGGCAAAAGAAAAGCAAG 1207
||||||||||||||||||||| |||||||||||| | |||| ||| ||||| ||||||||
Sbjct 1065 TTCTTATGTTCCAAGCTTAGTCTCATTGCAAATCGACAAGACGGGTAAAAGGAAAGCAAG 1124
Query 1208 AGATTATTAGATGGTTTC 1225
|||| | ||||| |||||
Sbjct 1125 AGATGACTAGATTGTTTC 1142
> AT3G13830.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4553943-4555076 FORWARD LENGTH=1134
Length=1134
Score = 449 bits (243), Expect = 2e-125
Identities = 532/660 (81%), Gaps = 66/660 (10%)
Strand=Plus/Plus
Query 23 GACGACGACGATGTCAAATCTTCCAGA-GGTTTTGGTAGAAGAGATTATCTCCAGGGTTC 81
||||||||||||||||| ||||||| | |||||||||||| |||||| |||| |||||||
Sbjct 15 GACGACGACGATGTCAACTCTTCCA-ATGGTTTTGGTAGACGAGATTCTCTCTAGGGTTC 73
Query 82 CCATTACATCTCTTGGATCATTCCGATCAAGC-TGTAAAAAATGGGAGGCTTTATCGAAA 140
|||||||||||||| ||||| | |||||| | || |||| |||||||||| |||||||
Sbjct 74 CCATTACATCTCTTAGATCACTAAGATCAA-CGTGCAAAAGATGGGAGGCTCAATCGAAA 132
Query 141 ACCCATCTTTTAGGTGGTAAAGCAGCAGAAGTAACCACAAGG--AAGCAGTTAC-TAGGG 197
||| ||||| |||||||| || ||| |||| ||||| |||||||||| |||||
Sbjct 133 ACCAATCTTGTAGGTGGT-AA--AGC------AACCGCAAGGAAAAGCAGTTACTTAGGG 183
Query 198 TTTATCCT-AGTTGATGACAAGATCTGTTCGATGAAACTCGATCTACATGGAATCACCAA 256
|||||||| | ||| | ||||||||||||| ||||| ||||| | | | | ||
Sbjct 184 TTTATCCTCA-TTGGTAACAAGATCTGTTCAATGAAGCTCGA-C--C------T-A--AA 230
Query 257 AGACGGCGATGACTTTGTTGACACATCAGTGAATCAAGTAAGTGCACTTGATCTTGATGA 316
| |||||||||||||||||||||||||||||||||| |||||||| | || |||||
Sbjct 231 TGGCGGCGATGACTTTGTTGACACATCAGTGAATCAAATAAGTGCA--T--TC--GATGA 284
Query 317 ATT-GTCGATATCTCAAATCTTTCACTGCGACGGCTTATTGCTATGCG-------T---- 364
|| | |||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 285 CTTCG-AGATATCTCAACTCTTTCACTGCGACGGCTTATTGCTTTGCGTCTCCAATAAAC 343
Query 365 -CT--T-CAGCAAGA-GGCTCATGGTGTGTAACATGTACTTGGGACAAACGAGGTTTATC 419
|| | |||||| | || ||||||| ||||||||||||||||| |||| ||||| ||
Sbjct 344 ACTACTACAGCAACACGG-TCATGGTATGTAACATGTACTTGGGGGAAACTAGGTTGATT 402
Query 420 AAACCCCGTCGCTTGTTCGAGAGATTCGATAA-ATCAGGCGT-GTATGCTTTCGGATATG 477
||| | || ||||||| ||| ||||||| || || ||| | |||||||||||| ||
Sbjct 403 GAACACTGTTGCTTGTTGGAGGGATTCGACAACTTC-GGC-TCGTATGCTTTCGG--AT- 457
Query 478 ATGATAGCAGCAAAAACCGTAACCACAAAATCTTGAGAAACAAGTCT-GTTGGTGGTGGT 536
|||||||||||||||||||||||||||||||||| ||||| || || ||| |||||||
Sbjct 458 ATGATAGCAGCAAAAACCGTAACCACAAAATCTTTAGAAAGAAA-CTTGTTTCTGGTGGT 516
Query 537 TACGAAATCTATAATTTCAGATCCGATTCATGGAAGGTTCTTAATGTTGATCTCGAAGAA 596
|| |||||||| | ||||| ||||||||||||||| | ||||||||||||||||| |||
Sbjct 517 TATGAAATCTACAGTTTCAAATCCGATTCATGGAAAGATCTTAATGTTGATCTCGGGGAA 576
Query 597 GATACACAGCTT-GATCAACAAGGAAGCTTGTCTTTGAAGGGAAATGCTTACTTTTTGGT 655
|||| | ||| | | ||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct 577 TCTACAGAACTTTG-TGAACTAGGAAGCGTGTCTTTGAAGGGAAATGCTTACTTTTCGGT 635
Score = 388 bits (210), Expect = 5e-107
Identities = 385/467 (82%), Gaps = 22/467 (5%)
Strand=Plus/Plus
Query 734 TTTACTCTGTTTTGACTTCACAACAGAGAGATTTGGACAGCTTCTGTCTCTGCCGTTT-- 791
||||||||||||||||||||| || ||||| |||||| || |||||||||||||||||
Sbjct 675 TTTACTCTGTTTTGACTTCACGACGGAGAGTTTTGGAAAGTTTCTGTCTCTGCCGTTTGA 734
Query 792 CACTCTGAAGTTGATGATGACGGAGTTCGAGAAGACAATGTGGTTTTATCTTGTGTTAGA 851
|| | || | || ||| || || ||| | | || | ||||||||||||||||||||
Sbjct 735 CAATGTG-A-CTGCTGAAGA-AGAATTC--G--G-CATTATGGTTTTATCTTGTGTTAGA 786
Query 852 GATGAGCAGCTTGCCGTGTTACATCAAAGTGACACGACAATAGGTATTTGGATTTCCACT 911
|||||||| ||||| |||||| ||||| |||||| |||||||||||||||| |||
Sbjct 787 GATGAGCATCTTGCTGTGTTATATCAACTTGACACTT---TAGGTATTTGGATTTCGACT 843
Query 912 GAGATCGAGCCCAATGCGGTGTCGTGGAGAGAGTTTTTGGAAGTGGACTTG-ACGACGGT 970
||||||||||||||| |||||||||||||||||||||| |||| |||||| | ||| |
Sbjct 844 GAGATCGAGCCCAATAAGGTGTCGTGGAGAGAGTTTTTGCAAGTAGACTTGTAT-ACGCT 902
Query 971 TGATGGTTTTCCGGATG-ACTTCAAAGCTGGGAGCTTC-TTCGTTGACGAGGAGAAGCAA 1028
|||||||||||||||| | || | ||||||||| ||| || ||||||||||||||||||
Sbjct 903 GGATGGTTTTCCGGATGCATTT-ACAGCTGGGAGATTCATT-GTTGACGAGGAGAAGCAA 960
Query 1029 GTCGCCGTAGTTTTTGATCAAGAGACCGAGGCCGGTGGCAACCAC--ACA-GCTTGCATC 1085
|||| |||||||| || ||| || ||| || | ||||||| | | |||| ||||
Sbjct 961 GTCGTTGTAGTTTTCAATGAAGCTACAGAGATCGATCTCAACCACGGAAACGCTTTCATC 1020
Query 1086 ATTGGAAAAGATGGATACTTCAACTCTGTGAATGTTGGAGATATTCCGCCCCCATACTTC 1145
|||||| |||||||||||||| |||| | || |||||||||| |||||||| | |||||
Sbjct 1021 TTTGGAAGAGATGGATACTTCACCTCTTTTAACGTTGGAGATACTCCGCCCCAAGACTTC 1080
Query 1146 ACTTCTTATGTTCCAAGCTTAGTGTCATTGCAAATCAAGAAGAAGGG 1192
|||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 1081 ACTTCTTATGTTCCAAGCTTAGCCTCATTGCAAATCGAGAAGACGGG 1127
> AT3G15935.1 | Symbols: | pseudogene, hypothetical protein |
chr3:5390599-5391763 REVERSE LENGTH=1165
Length=1165
Score = 111 bits (60), Expect = 1e-23
Identities = 222/295 (75%), Gaps = 31/295 (11%)
Strand=Plus/Plus
Query 840 TCTTGTGTTAGAGATGAGCAGCTTGCCGTGTTACATCAAAG-T-G-A--CA--CGACAA- 891
||| ||||||||||||||||||||||||||||| |||| | | | | || ||| |
Sbjct 767 TCTAGTGTTAGAGATGAGCAGCTTGCCGTGTTATATCAGCGCTTGGATTCATACGAGATC 826
Query 892 TAGG-TATTTGGATTTCCACTGAGATCGAGCCCAATGCGGTGTCGTGGAG-AGAGTTTTT 949
| || ||| ||| || ||||| |||| ||||| | |||||| |||||||| | ||||||
Sbjct 827 TTGGATATCTGGCTTACCACTAAGATTGAGCCTAGTGCGGTTTCGTGGAGCAT-GTTTTT 885
Query 950 GGAAGTGGACT-TGACGACGGTTGA-TGGTTTTCCGG--ATGACTTCAAAGCTGGGAGCT 1005
| || |||| | ||| ||| | | |||||||| | ||| | | | | ||| ||||
Sbjct 886 GAAACTGGA-TATGA-GACCACTCACTGGTTTTCAGTTTATGG-T-CGACGGTGGAAGCT 941
Query 1006 TCTTCGTTGACGAGGAGAAGCAAGTCGCCGTAGTTTTTGATC-AAG-AGAC-----C-GA 1057
||||| | |||||||||||| ||||||| || |||||||||| || | || | ||
Sbjct 942 TCTTCATCGACGAGGAGAAGAAAGTCGCTGTCGTTTTTGATCTAACCAAACATAAACAGA 1001
Query 1058 --G-G-CCGGTGGCAACCACACAGCTTGCATCATTGGAAAAGATGGATACTTCAA 1108
| | || || || |||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1002 CCGTGACCCGTCGCTACCAAACAGCTTACATCATTGGACAAGATGGATACTTCAA 1056
> AT3G49520.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18359584-18360750 FORWARD LENGTH=1167
Length=1167
Score = 82.4 bits (44), Expect = 1e-14
Identities = 188/254 (74%), Gaps = 23/254 (9%)
Strand=Plus/Plus
Query 891 ATAG-GTATTTGGATTTCCACTGAGATCGAGCCCAATGCGGTGTCGTGGAGAGAGTTTTT 949
|||| | ||||||||||| ||| |||| |||||||||||||| |||||||| | |||||
Sbjct 838 ATAGAG-ATTTGGATTTCGACTAAGATTGAGCCCAATGCGGTTTCGTGGAGC-ACTTTTT 895
Query 950 GGAA-GTGGACT-TGACGACGGTTGA-TGGTTTTCCGGATGACTTC---A--A-A---G- 996
||| ||||| | || | || | | |||||| ||||||| || | | | |
Sbjct 896 TGAAAGTGGA-TATGTC-ACTAATCAATGGTTTAACGGATGATTTTTTGATTAGATTTGA 953
Query 997 -C-TGGGAGCTTCTTCGTTGACGAGGAGAAGCAAGTCGCCGTAGTTTTTGAT-C-AA-GA 1051
| | ||||| || | |||||||||||| ||||||| ||| |||||||| | || |
Sbjct 954 ACCTAAAAGCTTTTTTATCGACGAGGAGAAGAAAGTCGCTGTACTTTTTGATACTAAAGT 1013
Query 1052 GACCGAGGCCGGTGGCAACCACACAGCTTGCATCATTGGAAAAGATGGATACTTCAACTC 1111
||| ||| || || || |||| | |||| |||| ||||| | |||||||||||||| ||
Sbjct 1014 GACAGAGACCTGTCGCTACCAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATC 1073
Query 1112 TGTGAATGTTGGAG 1125
||| || ||||||
Sbjct 1074 TGTCAACATTGGAG 1087
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 335 CTTTCACTGCGACGGCTTATTGCTATGC 362
||||||||||||||||||||||||||||
Sbjct 315 CTTTCACTGCGACGGCTTATTGCTATGC 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60792859995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5