BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929155
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3498 0.0
> AT3G13880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4572180-4574490 FORWARD LENGTH=2311
Length=2311
Score = 3498 bits (1894), Expect = 0.0
Identities = 2155/2283 (94%), Gaps = 10/2283 (0%)
Strand=Plus/Plus
Query 21 ATGTTGTTACAGTTCCGAGCAAAGAAGACTTCGTTCAACAACATTGCTCAAGATTCTCT- 79
|||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGTTGTTACAGTTCCGAGC--A-AAGACTTTTTTCAACAACATTGCTCAAGATTCTCTG 57
Query 80 TTTTCTTCTTATCACCAAACAAGTTGGATTGGGTTACAGGTTTTTGTCTTCGTTATGCCA 139
|| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 58 GTTAC-TCTTATCACCAAACGAGTTGGATTGGGTTACAGGTTTTTGTCTTCGTTATGCCA 116
Query 140 ACCAAAGAACACGGCTTTAGATTCCGAAGCTTACAAGAAACTTTTTCAGACAGCTGCGAA 199
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 117 ACCAAAGAACACGGCTTTAGATTCCGAAGGTTACAAGATACTTTTTCAGACAGCTGCAAA 176
Query 200 ATCAGGCTCCCTGGTACTGGGAAAGCTCGCCCATGGACACATGGTGAAGTCTTCCTTGAA 259
|||||||||| ||||||||||||||||||| |||||||||||| | ||||| ||||||||
Sbjct 177 ATCAGGCTCCGTGGTACTGGGAAAGCTCGCTCATGGACACATGATCAAGTCCTCCTTGAA 236
Query 260 CCCGTGTCTGTACTTGCTCAACAATCTTCTGAATATGTATTGCAAGTGCCGGGAATTGGG 319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 CCCGTGTCTGTACTTGCTCAACAATCTTCTGAACATGTATTGCAAGTGCCGGGAATTGGG 296
Query 320 TTTTGCACGCCAGTTGTTCGACAGAATGCCTGAACGAAACATTATTTCTTTTAATTCTTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTTGCACGCCAGTTGTTCGACAGAATGCCTGAACGAAACATTATTTCTTTTAATTCTTT 356
Query 380 GATTTCTGGGTACACTCAGGTGGGGTTTTATGAGCAGGCCATGGAATTGTTTCTTGAAGC 439
||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 357 GATTTCTGGGTACACTCAGATGGGATTTTATGAACAGGCCATGGAATTGTTTCTTGAAGC 416
Query 440 TAGGGATGATAATTTGAAGCTTGATAAGTTCACGTATGCCGGTGCATTAGGCTTTTGTGG 499
||| || | |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 417 TAGAGAAGCTAATTTGAAGCTCGATAAGTTCACGTATGCCGGTGCATTGGGCTTTTGTGG 476
Query 500 GGAAAGGTGTGATCTTGATTTTGGCAAATTGTTGCACGGGTTGGTTGTTGTTAATGGTCT 559
|||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 477 AGAAAGGTGTGATCTTGATTTAGGGGAATTGTTGCACGGGTTGGTTGTTGTGAATGGTCT 536
Query 560 GTCTCAGCAAGTGTTTTTGATCAATGTGTTGATCGACATGTATAGTAAGTGTGGAAAGCT 619
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 ATCTCAGCAAGTGTTTTTGATCAATGTGTTGATTGACATGTATAGTAAGTGTGGAAAGCT 596
Query 620 TGACCAAGCTATGTCTTTATTTGATAGATGCAATGAAAGGGATCAAGTTTCATGGAATTC 679
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 597 TGACCAAGCTATGTCTTTATTTGATAGATGCGATGAAAGGGATCAAGTTTCATGGAATTC 656
Query 680 TTTGATTTCCGGTTATGTTCGGGTTGGTGCAGCGGAAGAACCGCTTAATCTGTTGGCTAA 739
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 657 TTTGATTTCCGGTTATGTTCGGGTTGGCGCAGCGGAAGAACCGCTAAATCTGTTGGCTAA 716
Query 740 AATGCATAGAGCCGGCTTAAATTTGACTACTTATGCTCTGGGGAGTGTGCTAAAGGCTTG 799
||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 717 AATGCATAGAGACGGCCTAAATCTGACTACGTATGCTCTGGGGAGTGTGCTAAAGGCTTG 776
Query 800 TTGCATAAACCTAAACGAAGGATTTATAGAAAAAGGTATGGCAATTCACTGTTACGCAGC 859
||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 TTGTATTAACCTGAACGAAGGATTTATAGAAAAAGGTATGGCAATTCACTGTTATACAGC 836
Query 860 AAAACTAGGAATGGAATTTGATATAGTTTTCCGTACTGCGTTGCTTGACATGTATGCCAA 919
||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 837 AAAACTAGGAATGGAGTTTGATATAGTTGTCCGTACTGCATTGCTTGACATGTATGCCAA 896
Query 920 AAACGGAAGTTTGAAGGAGGCGATAAAGCTTTTCAGTTTGATGCCTGCCAAGAATGTGGT 979
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 897 AAACGGAAGTTTGAAAGAGGCGATAAAGCTTTTCAGTTTGATGCCTTCGAAGAATGTGGT 956
Query 980 TATGTATAACGCGATGATTTCTGGGTTTCTCCAAATGGATGAAATAACCGATGAAGCTTC 1039
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TACGTATAACGCAATGATATCTGGGTTTCTCCAAATGGATGAAATAACCGATGAAGCTTC 1016
Query 1040 GAGTGAAGCCTTTAAGCTCTTCATGGAAATGCAAAGACGGGGTTTGGAACCCTCGCCATC 1099
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1017 TAGTGAAGCCTTTAAGCTCTTCATGGATATGCAAAGACGGGGTTTGGAACCCTCGCCATC 1076
Query 1100 GACATTTTCAGTTGTGCTCAAAGCTTGTAGTGCGGCGAAAACCTTGGAATATGGAAGGCA 1159
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 GACATTTTCAGTTGTGCTCAAAGCTTGTAGTGCAGCGAAAACCTTGGAATATGGAAGGCA 1136
Query 1160 GATTCACGCTCTCATCTGTAAGAACAATTTCCAGTCTGATGAGTTTATTGGAAGTGCTCT 1219
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1137 GATTCACGCTCTCATCTGTAAGAACAATTTTCAGTCTGATGAGTTTATTGGGAGCGCTCT 1196
Query 1220 AATCGAGCTGTATGCATTAATGGGTTCAACTGAAGATGGAATGCAATGCTTTGCTTCAAC 1279
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AATCGAGCTGTATGCGTTAATGGGTTCAACTGAAGATGGAATGCAATGCTTTGCTTCAAC 1256
Query 1280 ATCAAAACAAGATATCGCCTCATGGACATCGATAATTGATTGTCATGTCCAAAACGAGCA 1339
|||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1257 ATCAAAGCAAGATATCGCCTCATGGACATCGATGATAGATTGCCATGTCCAAAACGAGCA 1316
Query 1340 GCTTGAAAGCGCATTTGACCTGTTCCGACAACTTTTTTCATCCCCTATAAGACCGGAAGA 1399
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1317 GCTTGAAAGCGCATTTGATCTGTTCCGACAACTTTTTTCATCCCATATAAGACCAGAAGA 1376
Query 1400 GTATACAGTTTCCCTTATGATGAGTGCTTGTGCTGATTTTGCTGCATTAAGCTCAGGAGA 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GTATACAGTTTCCCTTATGATGAGTGCTTGTGCTGATTTTGCTGCATTAAGCTCAGGAGA 1436
Query 1460 GCAGATTCAGGGTTATGCCATAAAGAGTGGAATTGATGCTTACACCAGTGTTAAGACCTC 1519
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1437 GCAGATTCAGGGTTATGCCATAAAGAGTGGAATTGATGCTTTCACCAGTGTTAAGACGTC 1496
Query 1520 CAGCATTTCTATGTACGCAAAGTCAGGTAACATGCCTCTTGCTAATAAAGTATTTATCGA 1579
|||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1497 AAGCATTTCTATGTATGCAAAGTCAGGTAACATGCCGCTTGCTAATCAAGTATTTATCGA 1556
Query 1580 GGTCCAAAACCCAGACGTTGCAACATACTCAGCTATGATCTCAAGCCTTGCGCAACACGG 1639
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1557 GGTCCAAAACCCAGACGTTGCAACATACTCGGCTATGATCTCAAGCCTTGCTCAACACGG 1616
Query 1640 TTCTGCTCACGATGCCTTAAACATCTTTGAGTCGATGAAAACCCGCGGAATTAAACCGAA 1699
||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1617 TTCTGCTAACGAAGCCTTAAACATCTTTGAATCGATGAAAACCCACGGAATTAAACCGAA 1676
Query 1700 CCAGCAAGCATTTCTCGGCGTTCTTATAGCTTGTTGCCACGGAGGATTAGTCACACAAGG 1759
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 CCAGCAAGCCTTTCTCGGTGTTCTAATAGCTTGTTGCCACGGAGGATTAGTCACACAAGG 1736
Query 1760 ACTAAACTATTTCCAAACCATGAAGAACAATTACGGGATTAACCCGAACGAGAAACATTT 1819
|||||| ||||||||| |||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 1737 ACTAAAGTATTTCCAATGCATGAAGAACGATTACAGGATTAACCCAAACGAGAAACATTT 1796
Query 1820 CACTTGCCTCGCCGATCTCTTAGGTCGCACCGGAAGATTATCAGATGCCGAGAACCTGAT 1879
||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1797 CACTTGCCTCGTCGATCTTTTAGGTCGCACGGGAAGATTATCAGATGCTGAGAATCTGAT 1856
Query 1880 TTTGAGCTCTGGTTTTCAAGACCATCCAGTGATGTGGAGAGCATTACTGAGTTCTTGCAG 1939
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1857 TTTGAGCTCTGGTTTTCAAGACCATCCAGTGACGTGGAGAGCATTACTGAGTTCTTGTAG 1916
Query 1940 GGTATACAAAGACGGCGTAATTGGGAGACGCGTTGCAGAGAGATTGATGGAACTCGAACC 1999
|| ||||||||| |||||||||||| ||||||||| |||||| |||||||||| |||||
Sbjct 1917 AGTTTACAAAGACAGCGTAATTGGGAAACGCGTTGCGGAGAGACTGATGGAACTTGAACC 1976
Query 2000 CGAGGCCTCTGGCTCATACGTATTGCTCCACAACATTTACAATGATTCTGGAGTCAATTC 2059
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1977 CGAGGCCTCTGGCTCATACGTATTGCTCCACAACATTTACAACGATTCTGGAGTCAATTC 2036
Query 2060 TTCAGCTGAGGAGGTTAGAGAGCTGATGAGAGATCGAGGGGTTAAGAAAGAACCAGCCGT 2119
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2037 TTCAGCAGAGGAGGTGAGAGAACTGATGAGAGATCGAGGGGTTAAGAAAGAACCAGCCTT 2096
Query 2120 GAGCTGGATCGTGCTCGGTAACCAAACTCATTGCTTCGCAGTGGCTGATTTGTCTCACCC 2179
|||||||||||| |||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 2097 GAGCTGGATCGTAATCGGTAACCAAACTCATTCCTTCGCCGTCGCTGATTTGTCTCACCC 2156
Query 2180 TTCGAGCCAGATGATCTACACAATGTTAGACACCATGAACACTGTAGTAGATTTTGTAGA 2239
|||||||||||||||||||||||||||||| |||||| ||| ||||| | |||||||||
Sbjct 2157 TTCGAGCCAGATGATCTACACAATGTTAGAGACCATGGACAATGTAG-A--TTTTGTAGA 2213
Query 2240 CCACACTCTTGTTCATTCTCGTTCTGTTTACATGAAAATTTAAAGCCAATTTTTGTCTTG 2299
||||||||||||||| | |||||||| |||||||||||||| ||||||||| |||||
Sbjct 2214 TTACACTCTTGTTCATTTTTGTTCTGTT-ACATGAAAATTTAATGCCAATTTTC-TCTTG 2271
Query 2300 CTA 2302
|||
Sbjct 2272 CTA 2274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114256440420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5