BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929158

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   276    1e-73


> AT3G13898.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT5G10310.1). | chr3:4584011-4584487 FORWARD 
LENGTH=477
Length=477

 Score =  276 bits (149),  Expect = 1e-73
 Identities = 234/273 (86%), Gaps = 13/273 (5%)
 Strand=Plus/Plus

Query  97   CAGAGATAA-CAAGCCCACAGGCTGCAGAACACAACTCTAAAAGGCCCATGTTGGTTCCC  155
            |||||||||  ||| || |||||||||||| | |||||||  || | ||| |||   |||
Sbjct  71   CAGAGATAATAAAG-CCGCAGGCTGCAGAAGAAAACTCTAGGAGACGCATTTTGAACCCC  129

Query  156  AATGagaataaag-agataaaagaagaaatggagaaaagaagaagaaTAGGATCAAAGCC  214
            ||||||||||||| |||  | ||  ||||   ||  ||||||||||||||||||||||||
Sbjct  130  AATGAGAATAAAGAAGA-GATAG-TGAAA---AG--AAGAAGAAGAATAGGATCAAAGCC  182

Query  215  ACCAAGTTGTGATAAGAAATGCTATGGATGTGAGCCATGTGAAGCAATTCAAGTCCCTAC  274
            |||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct  183  ACCAAGTTGTGAGAAAAAATGCTATGGATGTGAGCCATGTGAAGCAATCCAATTCCCTAC  242

Query  275  CATTTCTTCAATTCCTCATCTATCTCCTCATTATGCTAATTATCAGCCAGAGGGTTGGAG  334
            |||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||||
Sbjct  243  CATTTCTTCAATCCCTCACCTATCTCCTCATTATGCTAATTACCAACCTGAGGGTTGGAG  302

Query  335  ATGCCATTGTGCTCCT--T-AATTAATCATTCT  364
            |||||||||| |||||  | || ||||||||||
Sbjct  303  ATGCCATTGTCCTCCTCCTTAACTAATCATTCT  335



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5