BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929163
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13940.1 | Symbols: | DNA binding;DNA-directed RNA polymera... 1873 0.0
> AT3G13940.1 | Symbols: | DNA binding;DNA-directed RNA polymerases
| chr3:4600492-4602486 REVERSE LENGTH=1558
Length=1558
Score = 1873 bits (1014), Expect = 0.0
Identities = 1247/1360 (92%), Gaps = 14/1360 (1%)
Strand=Plus/Plus
Query 1 GAATCCAAAAGCTCAACAACCATGGAAGGCGAAGACAAGAATGAGCATAGAAACGAGGAA 60
|||||| ||| |||| | |||||||||||||||| |||||||| |||||||||| |
Sbjct 55 GAATCC-AAACCTCAGTAGCCATGGAAGGCGAAGAGAAGAATGATTATAGAAACGA-G-- 110
Query 61 GAAGAAGAGTTCAATACACCACAACAACTAGAAAAGAAGCAAAGGAAAGGCAAAGAAATA 120
|||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 111 GAAGAAGATTTCAATACACCACAACAACTACAAAAGAAGCAAAGGAAAGGGAAAAAAATA 170
Query 121 GCATCGGAAACAGAGGATCAAAACGAAGAAGACAAGAGAATTACACTCAAAGTCACTCAA 180
||| |||||||||||||| |||||||||||||||||||| |||| ||||||||||| |||
Sbjct 171 GCAACGGAAACAGAGGATGAAAACGAAGAAGACAAGAGAGTTACTCTCAAAGTCACGCAA 230
Query 181 GTCTCCGAGAGACCGGATAGAATCTCTCCGATCGTCGCCTACTTCTCTACAGGATACGAT 240
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 231 GTCGCCGAGAGACCCGATAGAATCTCTCCGATCGTCGCCTATTTCTCTACAGGATACGAT 290
Query 241 CCTTGTAAGGTAGATCCAGAAACAGGCAAGAGAGTTCATGAAACTCCCAAAGTTACTGTT 300
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 291 CCTTGTAAAGTAGATCCAAAAACAGGCAAGAGAGTTCATGAAACTCCCAAGGTTACTGTT 350
Query 301 TATAAGCATAAGGATGATTCGAAGAAGAGGATTCAGGTTGTGGTTAGTCCTCCAGGGGCA 360
|| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 351 TACAAGCATAAGGATGATTCTAAGAAGAGGATTCAGGTTGTTGTAAGTCCTCCAGGCGCA 410
Query 361 AGAGTTGAGTTCGTCGGAACTAATTACACCGGCGAGCAAGCTGCTATGCAGACGAATACC 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 411 AGAGTTGAGTTCGTCGGAACTAATTACACAGGCGAGCAAGCTGCTATGCAGACGAATACT 470
Query 421 TATAGAGTTGGTGTTTTCAATAGAGAGGCTAAGACTTTGAGGATTCTTCCTGTTGCTCAC 480
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 471 TATAGAGTTGGTGTTTTTAATAGAGAGGCTAAAACTTTGAGGATTCTTCCTGTTGCTCAC 530
Query 481 AATAAGATAATCAGATTGGAGCCTAAAGTTAAAGCTCAAGAAACAATTGAGGAAAAAGAT 540
||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 531 AATAAGATAATCAGATTGGAGCCTAGAGTTAAAGCTCAAGAAACAAATGAGGAAGAAGCT 590
Query 541 TCAGGAAGTGCGGTTGTTGAAGAACTTGGCA-AACTTACCACAGGAGATCGCGACCGTTA 599
||||||||||| || || ||||||||| | |||| | |||||||| ||||| |||||
Sbjct 591 TCAGGAAGTGCTGTCGTCAAAGAACTTGA-AGAACTAAAAACAGGAGAACGCGATCGTTA 649
Query 600 TAATACAAAGAAGGCTGTTACTCGGGACAAGAAGAAGCGTGCCTTAAATATGGGAGATGA 659
||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 650 TAATACAAAAAAAGCTGTTACTCGGGATAAGAAGAAGCGTGCCTTATATATGGGAGATGA 709
Query 660 TGCCGAGACTCAGAAGTTCCTTGACGGGAAACTTGGTGTGTTAGATGTTAACACAGCTGC 719
||| | |||||||||| ||||||| |||||||| ||| ||||| |||||||||||||||
Sbjct 710 TGCTGCGACTCAGAAGGTCCTTGATGGGAAACTAAGTGAGTTAGGTGTTAACACAGCTGC 769
Query 720 TCTTGAAAGCACCAGTTCTACTGTTGCACGCAACATTCCTCCTTATGATGCCGCTGCGAC 779
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 770 TCTTGAAGGCACCAGTTCTACTGTTGCACGCAACATTCCTCCTTACAATACCGCTGCAAC 829
Query 780 GACTCCAAAGGAAGCTTATCCCTTAGAAAAGATCATTGAAAAGGGCGAGTGGAGTTTCCT 839
|||| |||| ||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 830 GACTGCAAATGAAGCTTATCCCTTAGAAAAGATCATTGAAAAGGGGGATTGGAGTTTTCT 889
Query 840 TGAAGATATTTACTGGCTTCTGGAACAGGGAACTGAAGCAGCAACTGATGCTTACCCTGT 899
|||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||
Sbjct 890 TGAAGATATTTACTGGCTTCTGCAACAGGAAACTGAAGCAGCAACTGAGGCTTACCCTGT 949
Query 900 ATTTGTTCGCAACAGATTGTTCAAGCT-GCGTGATATCAAGGACGATATGAAAAAGCAGA 958
|||||| ||||||||||||| || | | ||| ||||||||||||||||||||||||||||
Sbjct 950 ATTTGTCCGCAACAGATTGTACA-GATTGCGAGATATCAAGGACGATATGAAAAAGCAGA 1008
Query 959 CGGTCTCTGGTGC-GTTAACGCTTCTCACCCATCTGGTTAAGTTCAAGGACAGAAACTCA 1017
|||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CGGTTTGTGGTGCTGC-AACGCTTCTCACCCATCTGGTTAAGTTCAAGGACAGAAACTCA 1067
Query 1018 ATGAATGGTTTCGATTCCGCTAAAAACCACAAGATGCCAGACATCTTCCGT-AGGAAATT 1076
|||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 1068 ATGAATGGTTACGATTCCGCTAAAGACCACAAGATGCCAGACATCTTCCGTCAA-AAATT 1126
Query 1077 TCAG-AGCATGTTCAAGGATTCTGAATCAGAGAGGATACCTGTTGACAAGGCCAACCTTC 1135
|| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1127 -CAACAGCATGTTCAAGGATTCTGAATCAGATAGGATACCTGTTGACAAGATCAACCTTC 1185
Query 1136 TGATAAGCTACGTTCTTGTGTTATCTCTTCATGTGGATAATTTCAAGACCGATCCAGAAG 1195
|||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||
Sbjct 1186 TGATAAGCTACGTTCTTGTGCTATCCCTTCACGTGGATAATTTCATGACCGATCCAGAAG 1245
Query 1196 ATATAGCAAAAGATCTGAGGATAAGCACAGTTGAGCTGAGGAAACATTTTCAACAGCTTG 1255
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1246 ACATAGCAAAAGATCTGAGGATAAGCACAGTTGAGCTGAGGAAACATTTTCTACAGCTTG 1305
Query 1256 GCTGCAAATTCGTGAAGCAGAATTCAACTTTGGTTGCGACCTTACCGACTCCTCTCAATT 1315
||||||||||| ||||||||||||| ||| |||||| ||||||||||| ||||||||||
Sbjct 1306 GCTGCAAATTCCTGAAGCAGAATTCTACTACGGTTGCTACCTTACCGACCCCTCTCAATT 1365
Query 1316 TCCCGGAGGTTAACCGGAGGCGGAAGACACGAAAGTGATG 1355
|||||||||||||||||||||| | | |||||||||||||
Sbjct 1366 TCCCGGAGGTTAACCGGAGGCGCAGGGCACGAAAGTGATG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5