BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929169
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G13980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1487 0.0
> AT3G13980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G54200.1);
Has 1485 Blast hits to 418 proteins in 98 species: Archae
- 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107;
Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). |
chr3:4619038-4620262 REVERSE LENGTH=1225
Length=1225
Score = 1487 bits (805), Expect = 0.0
Identities = 1011/1104 (92%), Gaps = 39/1104 (4%)
Strand=Plus/Plus
Query 21 ATGGAGATCACTTGGGAGAAACCTATTTCTTCATCTCACCACCGTCACCCTTCTTTCTCC 80
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAGATCACTTGGGAGAAACCTAAATCTTCATCTCACCACCGTAACCCTTCTTTCTCC 60
Query 81 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCT---CCCCTCCTCCCCTC 137
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCCACTCTCCTCGACCAAATCTACCGCTCCATCGACGATTCCTCCCCCCCTCCTCCCCTC 120
Query 138 GAATCCATCAAGAAGAAGAAGCATCACCACCAGCAACGTAACGCTTCTCTCCACGAGGAT 197
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 121 GAATCCATCAAGAAGAAGAAGCATCACCACCAACAACGTAACGCTTCTCTACACGAAGAT 180
Query 198 CGTGAAGTCTCTCC-AGTCTATCACCGCCGCTCAATTGCCGCTGATTACGAGAGATCCAG 256
|||||| ||||||| | ||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 181 CGTGAAATCTCTCCTA-TCTATCACCGCCGCTCAATCGCCGCTGATTTCGAGAGATCTAG 239
Query 257 GAGGAAGACTGACTTTCTCAGACACTCCAACTCTAACTCTTCTGATTCAAGCGGCGGCGG 316
||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 240 GAGGAAGACAGACTTTCTCAGACATTCCAACTCTAGCTCTTCTGATTCAA------GCGG 293
Query 317 ATTCTCCTCTTCCGAGTCTGATTCCTTCTACGGACGTTCCAAAtcct-c-ctcct-ctcc 373
|||||||||||||||||| ||||| ||| ||||||| |||||||| | | || || ||||
Sbjct 294 ATTCTCCTCTTCCGAGTCAGATTCATTCCACGGACGCTCCAAATCTTCCGCTTCTCCTCC 353
Query 374 -tc--ctcctGGAAAACAACCGAAGCCGATTCGAACATCACCCGTCGACCACTCCTCCGC 430
|| || || | |||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 354 TTCTTCTTCTCGTCAACAACCGAAACCGATTCGAACATCATCCGTCGACCACTCCTCCGC 413
Query 431 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCTTTAAAGAT 490
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 CGTCCAGAAACCTAAAGAACTCGGTGGCTTCTTGAGAACGAAATCAAAAGCGTTAAAGAT 473
Query 491 CTACTCCGACTTGAAAAAAGTCAAACAACCAATCTCTCCCGGCGGCAGACTCGCTACTTT 550
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 474 CTACTCCGACTTGAAAAAAGTCAAACAACCTATCTCTCCGGGCGGCAGACTCGCTACTTT 533
Query 551 CCTTAACTCTCTTTTCACCAACGCCGCCGCCACTAACCCTAAGAAGCACAAGAAAACTAC 610
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 CCTTAACTCTCTTTTCACCAACGCCGCC---ACTAACCCTAAGAAGCACAAGAAAACTAC 590
Query 611 AACCA-C-C-GT--TG-AAGAACCACACTCCTCCTCCACATGCTCCTCCGCATCCTCCTA 664
||| | | || || |||||||||||||||||||||||||||||||||| || ||||
Sbjct 591 CACCGTCGCCGTCGTGGAAGAACCACACTCCTCCTCCACATGCTCCTCCGCGTCGTCCTT 650
Query 665 CTCCAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 724
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTCTAGGTCTTGCTTGAGCAAAACTCCATCGTCTAGCGGCAAATCAAAAAGATCCGTACG 710
Query 725 GTTCTGCCCTGTCAATGTTATCCTCGACGAAGATTCCTCCATTCAC-ATGCCTTACGCTT 783
|||||| || |||||||| ||||| ||||||||||||||| || || |||||||||||||
Sbjct 711 GTTCTGTCCAGTCAATGTGATCCTTGACGAAGATTCCTCCTTT-ACCATGCCTTACGCTT 769
Query 784 ATAACAAC-AACAGTCTCTACGGTAGCAACGAAGCTAAACGCGACGTTATAGAAGAGCAT 842
|||||||| || || ||||||| || ||||||||||||||||| | |||||||||
Sbjct 770 ATAACAACGAA-AGACTCTACGATAACAACGAAGCTAAACGCGT-G-----GAAGAGCAT 822
Query 843 CGCCGTGTTATCGAAGCAGCCAAAGATCTTCTTAGAACTTACCATAATAAGAACAATGTT 902
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 823 CGCCGTGTCATCCAAGCAGCCAAAGATCTTCTTAGAACTTACCATAACAAGAACAAAGTT 882
Query 903 ACAACGACGACGAACATCACCAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 962
||||| |||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 883 ACAACTACGA--A-CATCAATAACGTAGAAGAAGATGATGAAGACGATGCTGCGAGTTGT 939
Query 963 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTTTCGGCGATTGGGATCGATAGGTATAGA 1022
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 940 GCAAGCTCTGATCTATTCGAGTTGGAGAATCTGTCGGCTATTGGGATCGAGAGGTATAGA 999
Query 1023 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTGGATAATATGAATCGAGTCATTGCTACT 1082
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1000 GAAGAGCTTCCGGTTTACGAAACCACTCGTCTTGATAATATGAATCGAGTCATTGCTACT 1059
Query 1083 GGTTTAATTGTATAATTATTATTA 1106
||||||||||||||||||||||||
Sbjct 1060 GGTTTAATTGTATAATTATTATTA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5