BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929172
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14010.1 | Symbols: CID4 | CTC-interacting domain 4 | chr3:4... 2745 0.0
> AT3G14010.1 | Symbols: CID4 | CTC-interacting domain 4 | chr3:4636365-4640981
FORWARD LENGTH=2346
Length=2346
Score = 2745 bits (1486), Expect = 0.0
Identities = 1711/1817 (94%), Gaps = 26/1817 (1%)
Strand=Plus/Plus
Query 35 TATTCCTCAGTCGAAATCTTCATCAAATGGATTTCCACTCAAAAGAGGTGAAAGAGAGGA 94
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 274 TATTCCTCAGTCGAAATCTTCATCAAATGGATTTCCACTCAAAAGAGGTGAAACAGAGGA 333
Query 95 AGTATTAAATAAGGCAAATACATCTAATACAGCATTCAATGGGGAAGCTGGAAGCTTGGA 154
||| ||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 334 AGTTTTACATAAGACAAATACATCAAATACAGTATTCAATGGGGAAGCTGGAAGCTTGAA 393
Query 155 GAGGCCTTCGCTTGATCGGTTAGTGTATC-TCTCAACATGTTATATCGGGCATCATGTGG 213
||||| ||| ||||||||||||||||| | || |||||||| | ||||||||||||||||
Sbjct 394 GAGGCTTTCACTTGATCGGTTAGTGTA-CTTCACAACATGTAAGATCGGGCATCATGTGG 452
Query 214 AAGTGCATCTAAGGAATGGATCAGTGTATACTGGTATTTTTCATGCTGCTGATGTAGAGA 273
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 453 AAGTGCATCTAAGGAATGGATCAGTGTATACCGGTATATTTCATGCTGCCAATGTAGAGA 512
Query 274 AGGATTTTGGAATCATTCTAAAGATGGCATGCTTGATTAAAGATGGTACTTTACGAGGGC 333
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 513 AGGATTTTGGAATCATTCTAAAGATGGCATGCTTGATTAAAGACGGTACTTTACGAGGAC 572
Query 334 ATAAATCCCGTTCCGAATTTGTCAGAAAGCCGCCTTCCAAGACGTTCATTATTCCGGCAG 393
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 573 ATAAATCCCGTTCCGAATTTGTCAGGAAGCCGCCTTCCAAGACATTCATTATTCCGGCAG 632
Query 394 ATGAACTTGTGCAAGTTATAGCTAAGGATCTCTCTGTATCCTCGACCAACATGTCAAATG 453
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 633 ATGAACTTGTGCAAGTTATAGCTAAGGATCTCTCTGTATCCTCGAACAACATGTCAAATG 692
Query 454 CGGTTCAGGGTGAGAAACCAGCGGAGCTGTTGACAGACTCTTCTATATCACAGTCTTATC 513
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 693 CGGTTCAGGGTGAGAAACCATCGGAGCTGTTGACAGACTCTTCTATATCACAGTCTTATC 752
Query 514 ATGTTGATCGGGAAAGACAGCTGCAACCCTGGGTACCTGATGAGACTATTCCACAGGGTG 573
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 753 ATGTTGATCGGGAAAGGCAGCTGCAACGCTGGGTACCTGATGAGACTATTCCACACGGTG 812
Query 574 CAGATTTGGAGAATGTGTTTGATAACCCTTGGAATAGGAAATGGAATCAGTTTGAGGTGA 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CAGATTTGGAGAATGTGTTTGATAACCCTTGGAATAGGAAATGGAATCAGTTTGAGGTGA 872
Query 634 ATGAGTCACTGTTTGGAGTAAAGAGTACTTTCGACGAGGAAATCTATACCACAAGACTTG 693
|| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 873 ATAAGTCACTGTTTGGAGTAAAAAGCACTTTCGACGAGGACCTCTATACCACAAGACTTG 932
Query 694 AGAGAGGCCCTCAGACTAAACAGTTGGAAGAGCAAGCCCGGAAGATTGCGAGAGAGATCG 753
||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 933 AGAGAGGTCCTCAGACTAAACAGTTGGAAGAGCATGCCCAGAAGATTGCGAGAGAGATCG 992
Query 754 AGGCTGAGACTACCCGAGATCTTCATGTAGCAGAGGAAAGAGGCCTTCAGCTTAATGAGA 813
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 993 AGGCTGAGACTACCCGAGATATTCATGTAGCAGAGGAAAGAGGCCTTCAGCTTAATGAGA 1052
Query 814 ACTTTGATTTTGACGAGGAAGCCAGATACTCATCGGTCCGTCCAGTTACTGGATTTGGTG 873
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1053 ACTTTGATTTTGACGAGGAAGCCAGATACTCATCTGTCCGTCCAGTCACTGGATTTGGTG 1112
Query 874 ATAGTGGGTTTGATGAGGAGGACAACGCATTGCTGGATACTTGCAACGATCTGACTTTTG 933
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ATAGTGGGTTTGATTTGGAGGACAACGCATTGCTGGATACTTGCAACGATCTGACTTTTG 1172
Query 934 GTGGTTCATCTACTTCTGATGGCCAGAAGCCAGCTTCTAGTGGCAAGGGTTGTGAAGAAT 993
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1173 GTGGCTCATCTACTTCTGATGGCCAGAAGCCAGCTTCTAGTGGCAAGGGCTGTGAAGAAT 1232
Query 994 TACGGGG-T-GG----CAGTCAGTCTTCTCGGAATAATACAAATGTAGATCAAAGCTGCT 1047
|||||| | || |||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1233 TACGGGTATCGGGTGACAGTCAGTCTTCTCGGAAAAATAAAAATGTAGATCAAAGCTGCT 1292
Query 1048 CGACCTCTAAACAACAATCCAAATATTTTCCTGCCGCAGGCAGCAATATCAGTGAGAGCC 1107
| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1293 CAACCTCTAAACAGCAATCCAAAGATTTTCCTGCCGCAGGCAGCAATATCAGTGAGAGCC 1352
Query 1108 AGCTAGATGAGCGAAGAAGAAACAATAACCAAGAG-T--CACACAATAACAGATCAGCTG 1164
|||||||||||| ||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 1353 AGCTAGATGAGCAAAGAAGAAAGAATAACGAAGAGGTTTCACACAATAACAGATCAGCTG 1412
Query 1165 AGGAATCAACTTCTGGTCATGGAGATATCAAAGAAGGTGCAAAATTTGGTGGTGGTGCAA 1224
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1413 AGGAATCAACTTCTGGTCATGGAGATATCAAAGAAGGTGCAAAATCTGGTGGTGGTGCAT 1472
Query 1225 CTTCGGTGTCGAAGGCTGTTACTGAGAGAGAAAGAGAAGCCAGTCAAATTTCTAGTAAAA 1284
| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1473 CCTCGGTGTCTAAGGCTGTTACTGAGAGAGAAAGAGAAGCCAGTCAAGTTTCTAGTAAAA 1532
Query 1285 CAAAATCTGAAAGCTCTTTTGGGCAGTCGGCTTCTAGAAGTTCAGAAAGTCGCCCAGGTC 1344
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1533 CAAAATCTGAAAGCTCTTTCGGGCAGTCTGCTTCTAGAAGTTCAGAAAGTCGCCCAGGTC 1592
Query 1345 CTTCAACATCAACTCGTCCTGGGTTATCACCGAGCTCGTCAATTGGTTCTATGACCTCAT 1404
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1593 CTTCAACATCAAGTCGTCCTGGGCTATCACCGAGCTCGTCAATTGGTTCTATGGCCTCAT 1652
Query 1405 CAGAAAAGTCCACACTTAATCCGAATGCAAAGGAATTCAAACTCAATCCAAACGCGAAGA 1464
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1653 CAGAAAAGTCCACACTGAATCCGAATGCAAAGGAATTCAAACTCAATCCAAAGGCTAAGA 1712
Query 1465 GTTTCAAACCATTGCAACCAGCTGTTGTGCGACCTCAATCTCCAGTTTCAGATGCCTCAT 1524
|||||||||||||||| |||||| || | ||||||||||||| | ||||||||||||
Sbjct 1713 GTTTCAAACCATTGCAGTCAGCTGCTGCACCACCTCAATCTCCAATCGCAGATGCCTCAT 1772
Query 1525 TCTACTACCCTGGTCCTAGTCATGTTCCTCCTGTTCAGCAGATGCCTGGAATGCCGCCTG 1584
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1773 TCTACTACCCTGGTCCTAGTCATGTTCCT---GTTCAGCAGATGCCTGGAATGCCGCCTG 1829
Query 1585 TTAATTACGGAGTCCCGCCATATCCTGGCAACCAACCACCGATGATGTATCATCCTCAAG 1644
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1830 TTAATTACGGACTCCCGCCATATCCTGGCAACCAACCACAGATGATGTATCATCCTCAAG 1889
Query 1645 CCTATTATCATCCGAATGGACAACCTCAGTATCCGCAGCAGCAAATGATGCCTGGTCAGC 1704
||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1890 CCTATTATCATCCAAATGGACAACCTCAGTACCCACAGCAGCAAATGATACCTGGTCAGC 1949
Query 1705 AGCAGCA--AA-TGATGCCTGGCCAGCAGCAGCCTAGGCCAGTTTATTACATGCAGCATC 1761
||||||| || |||| ||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1950 AGCAGCAGCAAATGATACCTGGTCAGCAGCATCCTAGGCCAGTTTATTACATGCA---TC 2006
Query 1762 CTCCTCCTCCTTACCCGCAGGACATGCCATATCATAATAAAGGACGAGAGTAAT---TAC 1818
|||||||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2007 CTCCTCCT--T-ACCCGCAGGACATGCCATATCATAATAAAGGACGAGAGTAATAACTAC 2063
Query 1819 TACTACCCGATGGTGAT 1835
|||||||||||||||||
Sbjct 2064 TACTACCCGATGGTGAT 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90812785905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5