BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929176
Length=2187
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolo... 3448 0.0
AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolo... 1714 0.0
> AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog
2 | chr3:4650757-4653914 REVERSE LENGTH=2675
Length=2675
Score = 3448 bits (1867), Expect = 0.0
Identities = 2088/2192 (95%), Gaps = 25/2192 (1%)
Strand=Plus/Plus
Query 1 AAACCAGAACCAACGAGCTCCAATGGTGGTGGCGACGACTATAGCGCTTTACGCGAGCCC 60
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 379 AAAGCAGAACCAACGAGCTCCAATGGTGGTGGCGACGACTATAGCACTTTACGCGAGTCC 438
Query 61 ACCAAGTAGCGTTTGTTCCACGCCACATCAGATCTCATGTGATCTCGATCTGACCTCCAG 120
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 439 ACCAAGCAGCGTTTGTTCCACGCCACATCAGATCTCATGTGATCTCGATCTCACCTCCAG 498
Query 121 GAGTTCGTCAACGTCAC-CTTCCATGGTTTCCTCGCCGCAGAAACCAATCGTCGGAGGTC 179
|||||||||||| || | ||||||||| |||||||||||||||||||||||| |||||||
Sbjct 499 GAGTTCGTCAACATC-CTCTTCCATGGCTTCCTCGCCGCAGAAACCAATCGTTGGAGGTC 557
Query 180 TCTCTTCACTTTTCTCCGGCGCATCCGTCAAATCTTCA---GCTTCCTCTTGCTCATACT 236
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 558 TCTCTTCACTTTTCTCCAGCGCATCAGTCAAATCTTCATCTTCTTCCTCTTGCTCATACT 617
Query 237 CAACCGGAGTAGATGAGTTTTCTTCAGTACGCTATGATCGGAGTGATGATTTAAAAGATC 296
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 618 CAACCGGAGTAGATGAGTTCTCTTCACTACGCTATGATCGGAGTGATGATTTGAAAGATC 677
Query 297 TGAGCTTGAGCAGCTCCTTTTGTTATTCTCCGGCGAAATTTGTGAATTCTTCGTATCTTA 356
||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||
Sbjct 678 TGAGCTTTAGCAGCTCCTTTGGTTATTCTCCGGCGAAATTTGTGAA---TTC--AT-TTA 731
Query 357 GACGAGATCTCCAGAGTCCTATCTCTGTGCTTCACGGTCCAGTTTCTTGTAGTTGTAGCC 416
||||||||| ||| || ||||||||||||||||| ||||| || || |||||||||||||
Sbjct 732 GACGAGATCACCAAAGCCCTATCTCTGTGCTTCATGGTCCGGTCTCGTGTAGTTGTAGCC 791
Query 417 CTCCGATGAGAATGTCTCGTGATCGGAATCTCGATGGCTCGTTTCGTTTAGGAGCTAGTG 476
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 792 CTCCGATGAGAATGTCTCGTGATCGGAATCTAGATGGTTCGTTTCGTTTAGGAGCTAGTG 851
Query 477 GATTGTTCAATGGTTTCGTAAGGAAAGCTCTTGGATCATGTGTGGATTACGAATTGGGAT 536
||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 852 GATTGTTCAATGGTTTCGTTAGGAAAGCTCTTGGATCATGTGTTGATTACGAGTTCGGAT 911
Query 537 CGGATTCTGTTCTCGTTGATGAGCTAACGTTTCCTATGGAGGATGGTTTTGGGGTTGATA 596
||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 912 CGGATTCTGTTCTCGTTGATGAGCTAACGTTTCCTAT---GGA---------GGTTGATA 959
Query 597 CGAGAAAGCCATATGCTAGGGATTTGTTAAGACGTGCTCAATTGAGACACAAAATCTTTG 656
||| |||||||||||||||||||||| |||||||||| |||||||||||||| || |||
Sbjct 960 CGATAAAGCCATATGCTAGGGATTTGCTAAGACGTGCACAATTGAGACACAAGAT-TTTC 1018
Query 657 AA-GATGAGTCTGTGATCAAAGCATTTTATGAAGCAGAGAAAGCTCATAGAGGACAGATG 715
|| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1019 AATGATGAATCTGTGATCAAAGCTTTTTATGAAGCAGAGAAAGCTCATAGAGGACAAATG 1078
Query 716 AGAGCTAGTGGTGATCCTTACCTTCAACATTGTGTTGACACTGCTATGTTGTTGGCTAAT 775
||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1079 AGAGCTAGTCGTGATCCTTACCTTCAGCATTGTGTTGAGACTGCTATGTTGTTGGCTAAT 1138
Query 776 ATCGGAGCTAACTCGACTGTTGTTGTTGCTGGGCTTCTTCATGATACTATGGATGATTCA 835
|||||||||||||| ||||||||||||||||| |||||||||||||| || || |||||
Sbjct 1139 ATCGGAGCTAACTCAACTGTTGTTGTTGCTGGCCTTCTTCATGATACCATTGACGATTCT 1198
Query 836 TTCATGAGCTATGATTATATTCTCAGAAACTTTGGAGCAGGAGTGGCTGATTTGGTCGAA 895
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1199 TTCATGAGCTATGATTATATTCTCAGAAACTTCGGAGCAGGAGTTGCTGATTTGGTTGAA 1258
Query 896 GGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACAATACGGCGTGTAAA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACAATACGGCGTGTAAA 1318
Query 956 ACTGTTGAAGCAGATCGATTGCACACAATGTTTCTTGCAATGGCAGATGCAAGAGCTGTT 1015
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACTGTTGAAGCAGATCGTTTGCACACAATGTTTCTTGCAATGGCAGATGCAAGAGCTGTT 1378
Query 1016 CTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACGCTTTGTCCCCAGTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACGCTTTGTCCCCAGTG 1438
Query 1076 AAGCAGCAGAGGTTTGCTAAAGAGACGTTGGAAATATTCGCACCCTTGGCTAATCGTTTG 1135
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1439 AAGCAGCAGAGGTTTGCTAAAGAGACGTTGGAAATATTTGCACCTTTGGCTAATCGTTTG 1498
Query 1136 GGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAAGTATCTTTACCCAAAC 1195
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1499 GGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAAACATCTTTACCCAAAC 1558
Query 1196 CAGCATAATGAGATGTCAACCATGCTTGAGGATTCATTCGATGAAGCCATGATTACTTCT 1255
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1559 CAGCATAATGAGATGTCAACCATGCTCGAGGATTCATTCGATGAAGCCATGATTACTTCT 1618
Query 1256 GCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGAAGGCATTTCTTATCATGTTCTGTGT 1315
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1619 GCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGCAGGCATTTCTTATCATGTTCTTTGT 1678
Query 1316 GGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTGAAGAAAAAGCTAACAGTG 1375
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1679 GGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTAAAGAAAAAGCTAACAGTG 1738
Query 1376 GATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGACAACGAAGGAGATTGTTAC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGACAACGAAGGAGATTGTTAC 1798
Query 1436 AAGGCCTTAGGAGTAGTTCATAGCTTATGGTCTGAAGTTCCTGGAAAGCTGAAGGATTAC 1495
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1799 AAGGCCTTAGGAGTAGTTCATAGTTTATGGTCTGAAGTTCCTGGAAAGCTGAAGGATTAC 1858
Query 1496 ATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACACGGTAGTGATGGACAATGGA 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 ATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACACGGTAGTGATGGACAATGGA 1918
Query 1556 ACAGTCCCACTTGAAGTCCAAATACGTACACAGGAGATGCATTTGCAAGCAGAATTTGGG 1615
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 ACAGTTCCACTTGAAGTCCAAATACGTACACAGGAGATGCATTTGCAAGCAGAATTTGGG 1978
Query 1616 TTTGCAGCTCATTGGAGGTACAAGGAAGGTGACTGCAAATACTCTTCGTTTGTGCTTCAG 1675
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1979 TTTGCAGCTCATTGGAGATACAAGGAAGGTGGCTGCAAATACTCTTCGTTTGTGCTTCAG 2038
Query 1676 ATGGTTGAATGGGCTCGGTGGGTCGTAACATGGCATTGCGAAGCAATGAGCAAAGACCGA 1735
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2039 ATGGTTGAATGGGCTCGGTGGGTCGTAACCTGGCATTGCGAAGCAATGAGCAAAGACCGA 2098
Query 1736 TCTTCCATAAGTTCTTCTGATTCCATAAAACCCCCTTGCAAGTTTCCGTCTCACTCCGAG 1795
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2099 TCTTCCATAAGTTCTTCAGATTCCATCAAACCCCCTTGCAAGTTTCCGTCTCACTCTGAG 2158
Query 1796 GACTGCCCGGCTTCTTACAAGCCTAACAGTAGCCAGGACGGACCAGTCTATGTCATCGTG 1855
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2159 GACTGCCCAGCTTCTTACAAGCCTAACAGTAGCCAGGATGGACCAGTCTATGTCATTGTA 2218
Query 1856 ATCGAAAATGACAAGATGTCTGTGCAAGAATTTCCAGCGAGTTCTACAGTTTCGGATCTG 1915
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2219 ATCGAAAATGATAAGATGTCTGTGCAAGAATTTCCAGCGAGTTCAACAGTCTCGGATCTG 2278
Query 1916 CTAAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCATGTATGGCATACCAGCAAAGGAA 1975
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 CTGAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCATGTATGGCATACCAGCAAAGGAA 2338
Query 1976 GAACTAAGGCCAAGGCTGAACCAAAGACCTGTAAGTGACCTCAAGTGGAAGCTGAAGATG 2035
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2339 GAACTAAGGCCAAGACTGAACCAAATACCTGTAAGTGACCTCAAGTGGAAGCTGAAGATG 2398
Query 2036 GGTGATGTGGTGGAGCTGACTCCAACAATTCCTGACGAGTCTCTGACTGAATACAGAGAA 2095
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2399 GGTGATGTGGTGGAGCTGACTCCAACAATTCCTGATGAGTCTCTGACTGAATACAGAGAA 2458
Query 2096 GAGATTCAACGGATGTATGATCGAGGACTCGCGTTTTCCCGCCCCGGAACCATGGTCGGA 2155
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 GAGATTCAACGCATGTATGATCGAGGACTCGCGTTTTCCCGCCCCGGAACCATGGTCGGA 2518
Query 2156 TGGGGAAGCTGATGGGTCCTCATATTGTTAAC 2187
|||||||||||||||||||||| |||||||||
Sbjct 2519 TGGGGAAGCTGATGGGTCCTCAAATTGTTAAC 2550
> AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog
3 | chr1:20210873-20213942 FORWARD LENGTH=2633
Length=2633
Score = 1714 bits (928), Expect = 0.0
Identities = 1767/2160 (82%), Gaps = 106/2160 (5%)
Strand=Plus/Plus
Query 21 CAATGGTGGTGGCGACGACTATAGCGCTTTACGCGAGCCCACCAAGTAGC-GTTTGTTCC 79
|||||||||| || ||||| ||||||||||||||||| ||| | || | | || ||||||
Sbjct 303 CAATGGTGGTAGCAACGACCATAGCGCTTTACGCGAGTCCAGCGAGCA-CTGTATGTTCC 361
Query 80 AC-GC-CA-C--ATC-A-G-----ATCTCATGTGATCTCGATCTGACCTCCAGGA-GTTC 126
|| || || | ||| | | ||||||||||| |||||||||| ||| | || |||
Sbjct 362 ACAGCTCACCAAATCAACGCTCATATCTCATGTGACCTCGATCTGAACTCTA-GATCTTC 420
Query 127 GTCAACGTCACCTTCCATGGTTTCCTCGCCGCAGAAACCAATCGTCGGAGGTCTCTCTTC 186
|| |||| |||||| | | ||| | | | | | | |||||||||||||||
Sbjct 421 ATCGGCGTCTTCTTCCA-CGAGT--TCG-C-C-G--A-C--T-ATCGGAGGTCTCTCTTT 468
Query 187 ACTTTTCTCCGGCGCATCCGTCAAATCTTCAGCTTCCTCTTGCTCAT-AC-T-CAACCGG 243
|||||||||||||| ||||||||||| || | || |||| ||||| | | || |||
Sbjct 469 GCTTTTCTCCGGCGCTTCCGTCAAATCATCTTCCTCTTCTTCCTCATCGCATCCATCCGT 528
Query 244 AGTAGATGAGTTTTCTTCAGTACGCTATGATCGGAGTGATGATTTAAAAGATCTGAGCTT 303
|| ||| || || ||||| ||||| ||||||| || || | |||| || |||
Sbjct 529 AGGAGAGGAATTAGCTTCAATACGCCATGATCGTAGCGA-G--------GATCGGACCTT 579
Query 304 GAGCAGCTCCTTTTGTTATTCTCCG-GCGAAATT--TGTGAATTCTTCGTATCTTAGACG 360
||| | ||||| |||||||||||| || ||||| | || |||||| || || | |||
Sbjct 580 AAGCGGATCCTTCTGTTATTCTCCGAGC-AAATTCAT-TG-GTTCTTCATACCTAAAACG 636
Query 361 AGATC-TCCAGAGTCCTATCTCTGTGCTTCACGGTCCAGTTTCTTGTAGTTGTAGCCCTC 419
||||| | || || ||| |||| ||||||||||||||| |||| | | || || ||||
Sbjct 637 AGATCAT-CAAAGCCCTGTCTCGGTGCTTCACGGTCCAATTTCATCTGGTAACAGTCCTC 695
Query 420 CGATGAGAATGTCTCGTGATCGGAATC-TCGA---TGGCTC-G-T-TTCGTTTAGGAGCT 472
||||||| || || || |||||||| | | || ||| || | | ||||| ||||| ||
Sbjct 696 CGATGAGGATTTCACGCGATCGGAA-CTTAGATGGTGGATCTGCTCTTCGTGTAGGATCT 754
Query 473 AGTGGATTGTTCAATGGTTTCGTAAGGAAAGCTCTTGGATCATGTGTGGATTACGAATTG 532
|| ||||||||||||||||||| |||||||| | || |||||||| ||||||| | |
Sbjct 755 AGCAGATTGTTCAATGGTTTCGTCAGGAAAGCGATAGGTTCATGTGTTGATTACG-A-T- 811
Query 533 GGATCGGATTCTGTTCTCGTTGAT--G-AGCTAACGTTT-CCTATGGAGGATGGTTTTG- 587
| | || |||||||| || ||| | ||||| ||||| || ||||| |||||||| |
Sbjct 812 --A-CAGACTCTGTTCTTGTCGATGAGCAGCTACCGTTTACC-ATGGACGATGGTTTCGA 867
Query 588 GGGTTGATACG-AGA-AAGCCATATGCTAGGGATTTG-TTAAGACGTGCTCAATTGAGAC 644
|| || | | ||| || |||||||||||||||||| || |||||||||||||||| ||
Sbjct 868 AGG-AGA-AAGAAGACAA-CCATATGCTAGGGATTTGCTT-AGACGTGCTCAATTGAAAC 923
Query 645 ACAAAATCTTTGAAGATGAGTCTGTGATCAAAGCATTTTATGAAGCAGAGAAAGCTCATA 704
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 924 ACAAAATCTTCGAAGATGAATCTGTGATCAAAGCATTTTACGAAGCTGAGAAAGCTCATA 983
Query 705 GAGGACAGATGAGAGCTAGTGGTGATCCTTACCTTCAACATTGTGTTGACACTGCTATGT 764
| |||||||||||||| | ||||||||| ||||| ||||||||||| || ||||| ||||
Sbjct 984 GGGGACAGATGAGAGCAACTGGTGATCCATACCTGCAACATTGTGTGGAGACTGCAATGT 1043
Query 765 TGTTGGCTAATATCGGAGCTAACTCGACTGTTGTTGTTGCTGGGCTTCTT-CATGATACT 823
|||||||| | || |||||||| |||||||||||||| ||||| || || |||||||||
Sbjct 1044 TGTTGGCTGACATTGGAGCTAATTCGACTGTTGTTGTAGCTGGAATT-TTACATGATACT 1102
Query 824 ATGGATGATTCATTCATGAGCTATGATTATATTCTCAGAAAC-TTTGGAGCAGGAGTGGC 882
| || ||||| || ||||||||||||||||||||||| ||| |||||| ||||||| ||
Sbjct 1103 TTAGACGATTCGTTTATGAGCTATGATTATATTCTCAG-AACTTTTGGATCAGGAGTTGC 1161
Query 883 TGAT-TTGGTCGAAGGGGTTTCGAAGCTTAGCCAATTGAGCAAACTCGCTAGAGAGAACA 941
|||| || || |||||||| || ||||| ||||| || || ||||| ||| | |||||||
Sbjct 1162 TGATCTT-GTGGAAGGGGTCTCTAAGCTGAGCCAGTTAAGTAAACTTGCTCGGGAGAACA 1220
Query 942 ATACGGCGTGTAAAACTGTTGAAGCAGATCGATTGCACACAATGTTTCTTGCAATGGCAG 1001
|||| || |||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1221 ATACCGCTTGTAAAACCGTAGAAGCAGATCGTTTGCACACTATGTTTCTTGCAATGGCAG 1280
Query 1002 ATGCAAGAGCTGTTCTTATAAAACTGGCTGATCGATTACACAACATGAAGACGCTTTACG 1061
| || ||||||||||||||||| | |||||||| ||||||||||||| ||| || || |
Sbjct 1281 ACGCCAGAGCTGTTCTTATAAAGTTAGCTGATCGGTTACACAACATGATGACTCTATATG 1340
Query 1062 CTTTGTCC-CCAGTGAAGCAGCAGAGGTTTGCTAAAGAGACGT-TGGAAATATTCGCACC 1119
||||| || |||||||||| ||| |||||||| ||||| || | | || ||||| || ||
Sbjct 1341 CTTTG-CCACCAGTGAAGCGGCAAAGGTTTGCCAAAGAAAC-TCTAGAGATATTTGCGCC 1398
Query 1120 CTTGGCTAATCGTTTGGGAATCTCTACCTGGAAAGTTCAGCTTGAAAATCTTTGTTTCAA 1179
|||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||| ||
Sbjct 1399 TTTGGCTAATCGTTTGGGAATTTCTAGCTGGAAAGTTAAGCTTGAAAATCTGTGTTTTAA 1458
Query 1180 GTATCTTTACCCAAACCAGCATAATGAGATGT-CAACCATGCTTGAGGATTCATTCGATG 1238
| |||| | || | ||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 1459 GCATCTCCATCCTGATCAGCACCATGAGATGTCCGA-TATGCTTGAGGATTCATTCGATG 1517
Query 1239 AAGCCATGATTACTTCTGCAATAGAGAAATTGGAGCAAGCTCTTAAGAAAGAAGGCATTT 1298
|||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
Sbjct 1518 AAGCTATGATTACTTCTGCGATTGAGAAATTGGAGCAAGCGCTTAAGAAAGAAGGCATCT 1577
Query 1299 CTTATCATGTTCTGTGTGGCCGGCACAAGAGCTTGTATAGTATTTACAGCAAGATGTTGA 1358
|||| |||||| | | ||| ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1578 CTTACCATGTTGTCTCTGGACGGCACAAGAGTTTGTATAGTATCTACTGCAAGATGTTGA 1637
Query 1359 AGAAAAAGCTAA-CAGTGGATGAAATTCATGACATTCATGGGTTACGTTTGATTGTTGAC 1417
|||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1638 AGAAAAAGCTAACCA-TGGATGAAATTCATGATATTCATGGCTTACGTTTGATTGTTGAC 1696
Query 1418 AACGAAG-GAGATTGTTACAAGGCCTTAGGAGTAGTTCA-TAGCTTATGGTCTGAAGTTC 1475
|| | || |||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 1697 AATG-AGAAAGATTGTTACAAGGCCTTGGGAGTAGTTCACAAGC-TATGGTCTGAAGTTC 1754
Query 1476 CTGGAAAGCTGAAGGATTACATAACTCATCCCAAATTCAACGGGTATCAATCTTTGCACA 1535
||||||||||||| |||||||| |||||||||| ||||||||||| ||||||||||| |
Sbjct 1755 CTGGAAAGCTGAAAGATTACATTTCTCATCCCAAGTTCAACGGGTACCAATCTTTGCATA 1814
Query 1536 CGGTAGTGATGGACAATGGAAC-AGTCCCACTTGAAGTCCAAATACGTACACAGGAGATG 1594
| |||||||||| ||||||| | ||| || ||||| |||||||| ||| ||||||||
Sbjct 1815 CTGTAGTGATGGGTGATGGAACTATTCCG-CTGGAAGTTCAAATACGGACAAAGGAGATG 1873
Query 1595 CATTTGCAAGCAGAATTTGGGTTTGCAGCTCATTGGAGGTACAAGGAAGGTGACTGCAAA 1654
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1874 CATTTGCAAGCTGAATTTGGGTTTGCAGCTCACTGGAGATACAAGGAAGGTGACTGCAAA 1933
Query 1655 TACTCTTCGTTTGTGCTTCAGATGGTTGAATGGGCTCGGTGGGTCGTAACATGGCATTGC 1714
|||| |||||||||||||| |||||||||||||| | ||||| || || |||||||
Sbjct 1934 CACTCATCGTTTGTGCTTCAAATGGTTGAATGGGCAAGATGGGTTGTGACCTGGCATTTT 1993
Query 1715 GAAGCAATGAGCAAAGACCGATCTTCCATAAGTTCTTCTGATTCCATAAAACCCCCTTGC 1774
||| | |||||||||||| |||| || || | |||||||| || | | ||
Sbjct 1994 GAAACCATGAGCAAAGACGGATCGTCGATCTGCTCTTCTGAGCCCTTG--------T-GC 2044
Query 1775 AAGTTTCC-GTCTCACTCCGAGGACTGCCCGGCTTCTTACAAGCCTAACAGTAGCCAGGA 1833
| |||||| ||||||| | || ||||| ||| ||| || ||||||| ||| ||| ||
Sbjct 2045 A-GTTTCCCGTCTCACGCAGAAGACTGTCCGTTTTCATATAAGCCTAGTGGTAACCAAGA 2103
Query 1834 CGGACCAGTCTATGTCATCGTGATCGAAAATGACAAGATGTCTGTGCAAGAATTTCCAGC 1893
|||||||||||||| || || ||||||||||| |||||| |||||||||| ||||| |
Sbjct 2104 AGGACCAGTCTATGTGATTGTAATCGAAAATGAGAAGATGACTGTGCAAGAGTTTCCCGA 2163
Query 1894 GAGTTCTACAGTTTCGGATCTGCTAAGCCGGGCGGGGCCAGGGAGCTCGAGGTGGTCCAT 1953
|| |||||| || ||||| ||| || || | || || |||||||||||||| ||||| ||
Sbjct 2164 GAATTCTACCGTGTCGGACCTGTTACGCAGAGCAGGACCAGGGAGCTCGAGATGGTCAAT 2223
Query 1954 GTATGGCATACCAGCAAAGGAAGAACTAAGGCCAAGGCTGAACCAAAGACCTGTAAGTGA 2013
||| |||| || ||||||||||| ||||||||||| || ||||| | ||||||||||||
Sbjct 2224 GTACAGCATCCCGGCAAAGGAAGAGCTAAGGCCAAGACTTAACCAGACACCTGTAAGTGA 2283
Query 2014 CCTCAAGTGGAAGCTGAAGATGGGTGATGTGGTGGAGCTGACTCCAACAATTCCTGACGA 2073
|| || || |||||||||||||| ||||||||||||||||||||| | || |||||| |
Sbjct 2284 TCTGAAATGCAAGCTGAAGATGGGAGATGTGGTGGAGCTGACTCCAGCCATACCTGACAA 2343
Query 2074 GTCTCTGACTGAATACAGAGAAGAGATTCAACGGATGTATGATCGAGGACTCGCGTTTTC 2133
||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||
Sbjct 2344 GTCTCTGACTGAATACAGAGAGGAAATTCAGCGGATGTATGATCGAGGGCTTGCGTTTTC 2403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108483377745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5