BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929201
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1720 0.0
> AT3G14220.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:4732893-4734609 FORWARD LENGTH=1364
Length=1364
Score = 1720 bits (931), Expect = 0.0
Identities = 1068/1135 (94%), Gaps = 5/1135 (0%)
Strand=Plus/Plus
Query 1 GCTA-AAAAACCTTTCTAGAAATGGCAAAGAACCGTAACTTAGTCTTCTTCTTAGGGCTA 59
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 126 GCTAGAAAAACCTTTCCAAAAATGGCAAAGAACCGTAACTTAGTCTTCTTCTTAGGGGTA 185
Query 60 TTAGCGTCTTTTACACTCGCCAGTTTCCCGGTGAAC-GTTTCCGGCGAACCCCCTCTCTT 118
|||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| ||||
Sbjct 186 TTAGCGTCTTTTACACTCTCCAGTTTCCCGGT-AACTGTTTCCGGCGAGCCCCCTATCTT 244
Query 119 ATTCACTTTCGGCGACTCTTCCTACGATGTGGGCAACACGAAGTTCTTCTCGTCGGAGTT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATTCACTTTCGGCGACTCTTCCTACGATGTGGGCAACACGAAGTTCTTCTCGTCGGAGTT 304
Query 179 CGATCCGGCCACCACGTGGCCTTACGGCGACTCCATCGATGATCCAACCGGTCGTTGGTC 238
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 305 CGATCCAGCCACCACGTGGCCTTACGGCGATTCCATCGATGATCCCTCCGGTCGTTGGTC 364
Query 239 TGACGGCCACATTGTCCCAGATTTCGTCGGTCGATTGATTGGTCAACGTGAACCAATTCC 298
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 365 TGACGGCCACATTGTCCCAGATTTCGTCGGTCGATTGATTGGTCATCGTGAACCGATTCC 424
Query 299 TCCGGTGCTTGACCCAAAAGCCGATCTTTCTCGTGGAGCAAGCTTTGCCATTGCTGGAGC 358
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCCGGTACTTGATCCAAAAGCTGATCTTTCTCGTGGAGCAAGCTTTGCCATTGCTGGAGC 484
Query 359 AGTTGTTCTTGGATCTCAATCTGCGACTGTATCCATGAATTTTGGACAACAGATATCGAA 418
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 485 AGTTGTTCTTGGATCTCAATCTACTACTGCATCCATGAATTTTGGACAACAGATATCGAA 544
Query 419 GTTTATAGAGTTACATAAG-AGATGGACTGATAAAGAACGAGCAGAAGCTATATACATGG 477
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 545 GTTTTTAGAGTTACATAAGCA-ATGGACTGATAAAGAACGAGCAGAAGCTATATACATGG 603
Query 478 TTAACATCGGAGCTGATGATTACTTGAATTTCGCAAAGGCTCATCCAAATGCCAATACTG 537
| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TAAACATAGGAGCTGAGGACTACTTGAATTTCGCAAAGGCTCATCCAAATGCCAATACTG 663
Query 538 TGGAGCAGGTTACTCAAGTTGCCTATGTTCTCCAAAGGATATCAAGAGAGCTCATGAGTA 597
|||||||| | |||||||||||| | ||||||||||||||| |||||||||||| ||||
Sbjct 664 TGGAGCAGCTAACTCAAGTTGCCCACGTTCTCCAAAGGATACCAAGAGAGCTCACGAGTT 723
Query 598 TATACAGGGCAGGTGGGGCTAGGAAGTTTGCGGTACAGAATTTGGGGCCGCTTGGTTGCT 657
|||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 724 TATACAGGGCAGGTGGAGCGAGGAAGTTTGCGGTACAGAATTTGGGACCGCTTGGTTGTT 783
Query 658 TACCGATAGCGAGACAAGAGTTTAAGACAGGTGAAAAGTGTATGGAGATGGTTAACTTCA 717
||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 784 TACCGATAGTGAGACAAGAGTTTAAGACAGGTGAGAATTGTATGGAGATGGTTAACTTCA 843
Query 718 TGGCGAAAACACACAATGAAAGGCTTAGTGGTGTGCTCTTTTCGATGACTGTACCATTAC 777
||| ||||||||||||||||||||||||| || ||||| || |||| || ||||| ||||
Sbjct 844 TGGTGAAAACACACAATGAAAGGCTTAGTCGTTTGCTCGTTGCGATAACCGTACCGTTAC 903
Query 778 TGTACCGTGGCTTCCGGTACAGCCTCTTTGATTTCAACGGTGAAATTCTCCGGAGGATCA 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 904 TGTACCGTGGCTTCCGGTACAGCCTCTTTGATTTCAATGGTGAAATTCTCCGGAGGATCA 963
Query 838 ATGAACCATCACTCCACGGATATACTGATACAACGACTTCTTGCTGTGGAACTGGATCGA 897
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 964 ATGAACCATCACTCCATGGATATACTGATACAACGACTTCTTGCTGCGGAACTGGATCGA 1023
Query 898 GAAATGCATACGGGTGCGGTTATAGCAACGTGCATGCGAAGCTCTGCAGCTACCAGAAAT 957
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1024 GAAATGCATACGGGTGCGGTTATAGTAACGTGCATGCTAAGCTCTGCAGCTACCAGAAAT 1083
Query 958 CATTTTTGTTCTTCGACGGGCGTCACACCACCGAGAAAACAGATGAAGAAATCGCTAATC 1017
||||||||||||||||||||||||||| |||||||||||| ||||||||| | |||||||
Sbjct 1084 CATTTTTGTTCTTCGACGGGCGTCACAACACCGAGAAAACCGATGAAGAAGTTGCTAATC 1143
Query 1018 TGTTTTATTCCGGAGACAGACATGTCGTCTCTCCGGTGAATATAAAGGATCTCGTAGGTA 1077
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1144 TGTTTTATTCCGGAGACAAACATGTCGTCTCTCCGATGAATATAAAGGATCTCGTAGGTA 1203
Query 1078 AATCGGTGAACGATCTTCTTGCGCAAGAAATCTAGAAACCCCAATCCTGTTCTGT 1132
|| | | || |||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1204 AAGCAGCGACCGATCTTCTTGCGCAAGAAATCTAGAAATCCCAATCGTGTTCTGT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5