BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929203
Length=1423
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146... 1825 0.0
> AT3G14230.1 | Symbols: RAP2.2 | related to AP2 2 | chr3:4737146-4739136
REVERSE LENGTH=1644
Length=1644
Score = 1825 bits (988), Expect = 0.0
Identities = 1309/1452 (90%), Gaps = 70/1452 (5%)
Strand=Plus/Plus
Query 11 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATTCCGCCGCCGAGGTCCCT 70
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 127 TGAAGCCACCATGTGTGGAGGAGCTATAATCTCCGATTTCATACCTCCGCCGAGGTCCCT 186
Query 71 CCGTGTCACTAGCGAGTTTATCTGGCCGGATCTGAAAAACAAAGGGAAAAAAGCTTCGAA 130
||| ||||||| |||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 187 CCGCGTCACTAACGAGTTTATCTGGCCGGATCTGAAAAACAAAGTG---AAAGCTTCAAA 243
Query 131 GAAGAGATCGAATAAGCGACCCGATTTCTTCGATCTGGACGATGAATTCGAAGCTGATTT 190
||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 244 GAAGAGATCGAATAAGCGATCCGATTTCTTCGATCTTGACGATGATTTCGAAGCTGATTT 303
Query 191 CCGGGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACGAAATCGATGATGGTGTCTT 250
|| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 304 CCAAGGGTTTAAGGATGACTCGGCTTTTGACTGCGAAGACG--AT-GATGA---TGTCTT 357
Query 251 CGTCAATGTGAAGCCTTTTGTCTTCACCGCAACTACTAAACCCGTAGCTT-C-CTCT-GT 307
||||||||| |||||||| |||||||||||||||||||| |||||||||| | || | ||
Sbjct 358 CGTCAATGTTAAGCCTTTCGTCTTCACCGCAACTACTAAGCCCGTAGCTTCCGCTTTCGT 417
Query 308 CCCCGTTTTCGCATCCA-CT-GTAGGATCAGCATCTGCCAAGAAAACTGTAGAGTCCGAT 365
| || | | || | | ||||| ||||||| ||||||||||||||||||||||| |
Sbjct 418 CTCC--ACTGGTATATATTTGGTAGGTTCAGCATATGCCAAGAAAACTGTAGAGTCCGCT 475
Query 366 GGGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGAATTAGGCAG 425
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 476 GAGCAAGCTGAGAAATCTTCTAAGAGGAAGAGGAAGAATCAATACCGAGGGATTAGGCAG 535
Query 426 CGCCCCTGGGGCAAATGGGCTGCTGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 485
|| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 536 CGTCCTTGGGGAAAATGGGCTGCGGAGATCCGTGATCCGAGAAAAGGCTCCCGAGAATGG 595
Query 486 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGACGCAGCAGCACGCAGA 545
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 596 CTTGGAACATTCGACACTGCTGAGGAAGCAGCAAGAGCTTATGATGCTGCAGCACGCAGA 655
Query 546 ATCCGAGGCACGAAAGCTAAGGTGAA-TTTCCCAGAGGAGAAGAACCCT-TC--CGTCTC 601
||||| |||||||||||||||||||| |||||| ||||||||||||||| | ||| ||
Sbjct 656 ATCCGTGGCACGAAAGCTAAGGTGAATTTTCCC-GAGGAGAAGAACCCTAGCGTCGTATC 714
Query 602 CCAGAAACGTCCTACTGGTAAGACCAATAATCTTCAGAAACCAGTGGCTAAACCAAACAA 661
|||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||
Sbjct 715 CCAGAAACGTCCTAGTGCTAAGACTAATAATCTTCAGAAATCAGTGGCTAAACCAAACAA 774
Query 662 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAGCGTAACTTTGGTTCAGCAGCCAACACATCTGAGTCAGCAGTACTGCAACAACTCCTT 834
Query 722 TGATAACATGGGGAATGACTCCTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 781
|| || | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 835 TG---AC-------A--ACTCTTTTGGTGATATGAGTTTCATGGAAGAGAAGCCTCAGAT 882
Query 782 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGC-GGAAGGTAATAATGGATTCC 840
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||
Sbjct 883 GTACAACAATCAGTTTGGGTTAACAAACTCGTTCGATGCTGGA-GGTAACAATGGATACC 941
Query 841 AGTATTTCAGTTCCGATCAGGGAAGTAACTCATTCGACTGCTCTGAGTTCGGGTGGAGTG 900
|||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 942 AGTATTTCAGTTCCGATCAGGGCAGTAACTCCTTCGACTGTTCTGAGTTCGGGTGGAGTG 1001
Query 901 ATCACGGCCCCAAAACACCTGAGATCTCTTCAATGCTTGTCAATAACAACCAAGCACCAT 960
|||||||||| |||||||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 1002 ATCACGGCCCTAAAACACCCGAGATCTCTTCAATGCTTGTCAATAACAACGAAGCATCAT 1061
Query 961 TCGTTGAAGAAACCAATGCAGCAAAGAAGCTCAAACCCAACTCTGATGATTCAGACGATC 1020
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 1062 TTGTTGAAGAAACCAATGCAGCCAAGAAGCTCAAACCAAACTCTGATGAGTCAGACGATC 1121
Query 1021 TGATGGCATACCTTGACAACGCCTTATGGGACACTCCACTAGAAGTGGAAGCCATGCTTG 1080
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1122 TGATGGCATACCTTGACAACGCCTTGTGGGACACCCCACTAGAAGTGGAAGCCATGCTTG 1181
Query 1081 GTGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAATGGA-CGTATGGAGCTTA 1139
| ||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 1182 GCGCAGATGCTGGTGCTGTGACTCAGGAAGAGGAAAACCCAGTGGAGC-TATGGAGCTTA 1240
Query 1140 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGCTTG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1241 GATGAGATCAATTTCATGCTGGAAGGAGACTTTTGAAGTGATCGATGGTTCCTTAGTTTG 1300
Query 1200 TAAATAAAGCTGTGTGTTGGATTCTGCTGTTGGGGGGTGGTACAAGTCACACTTGAAGCT 1259
||||||||||||||| | ||||| |||||||||||| ||||||||||||||| | |||||
Sbjct 1301 TAAATAAAGCTGTGT-T-GGATTTTGCTGTTGGGGGATGGTACAAGTCACACCTCAAGCT 1358
Query 1260 CGT-TGCATTGGT-T-TC-T-----T-------AT-GAG--TCTCTCTTTTAATTTTGTT 1300
| | ||||||||| | || | | || ||| | ||||||||||||||||
Sbjct 1359 C-TATGCATTGGTATCTCATGAGCCTCTCTTCCATAGAGAGTTTCTCTTTTAATTTTGTC 1417
Query 1301 GAAATAAAAA-GGTGTGATGAAGTAAATAGAGGTGTAATA-T--CTATCTAATGAGTCTT 1356
|||||||||| ||||||||||||||||||||||| ||||| | ||||||| | ||||||
Sbjct 1418 GAAATAAAAAAGGTGTGATGAAGTAAATAGAGGTATAATAATATCTATCTATTAAGTCTT 1477
Query 1357 GTTTC---CTT-CAttttttgtttttCTTT-CTATTTAAAAGACAGTTTATTTAATCTTC 1411
|||| ||| ||||||| || ||||||| ||||||||||||||||||||| | |||||
Sbjct 1478 GTTTTGTTCTTTCATTTTT-GTATTTCTTTTCTATTTAAAAGACAGTTTATT-AGTCTTC 1535
Query 1412 TGAGCTATCTTT 1423
|||||| |||||
Sbjct 1536 TGAGCTCTCTTT 1547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70130161365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5