BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929217

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25980.1 | Symbols: MAD2 | DNA-binding HORMA family protein ...   130    7e-30


> AT3G25980.1 | Symbols: MAD2 | DNA-binding HORMA family protein 
| chr3:9503056-9504670 FORWARD LENGTH=1074
Length=1074

 Score =  130 bits (70),  Expect = 7e-30
 Identities = 74/76 (97%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  21   ATGGCGTCCAAAATAGTGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC  80
            ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  ATGGCGTCCAAAACAGCGGCTGCTAAAGATATCATCACTTTACACGGATCTGCTGCCATC  236

Query  81   GTCAGCGAATTCTTCT  96
            ||||||||||||||||
Sbjct  237  GTCAGCGAATTCTTCT  252



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12416134003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5