BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929218
Length=2114
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2139 0.0
> AT3G14330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:4779688-4782452 REVERSE LENGTH=2134
Length=2134
Score = 2139 bits (1158), Expect = 0.0
Identities = 1306/1380 (95%), Gaps = 0/1380 (0%)
Strand=Plus/Plus
Query 203 ATGTTGTCACTACACAAGCTTATCTTACTCCATTGAGGTCTCAAACTATCAACCATGCTA 262
||||| ||||| |||||||||||||||||||| || ||||||| | ||||||||||||||
Sbjct 204 ATGTTATCACTCCACAAGCTTATCTTACTCCACTGGGGTCTCAGAGTATCAACCATGCTA 263
Query 263 AATTCTTACAAATCCCATGGAGACAATTTGTCTTCAAAAAGCCTTTAGGTCTCTGTAAAT 322
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 264 AATTTTTACAAATCCCATGGAGACAATTTGTCTTCACAAAGCCTTTAGGTCTCTCTAAAT 323
Query 323 CAACCAAACTAGACGAAGCCGTGACCTTGATAGAGAAGTCATCAACCTCACCGTCCAATC 382
|||||||||| |||||||||||||| ||||||||||| |||||| |||| ||||||||||
Sbjct 324 CAACCAAACTCGACGAAGCCGTGACATTGATAGAGAATTCATCATCCTCGCCGTCCAATC 383
Query 383 TCTCTACTCCCGAAGCTTACACAGACCTACTTCATGCTTGCATCTCCGCTAAATCGCTTC 442
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
Sbjct 384 TCTCCACTCCCGAAGCTTACACAGACCTTCTTCATGCTTGTATCTCCGCTAAATCACTCC 443
Query 443 ACCATGGTATAAAAATCTGTTCTTTGGTTCTCAACAATCCTAGTCTCCGTCACGATCCCA 502
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 444 ACCATGGTATAAAAATATGTTCTTTGATTCTCAACAATCCTAGTCTCCGTCACAACCCCA 503
Query 503 AATTGCTTAGCAAGCTCATTACCCTTTTCTCGGTTTGTCGCCGATTGGATCTCGCTCGGA 562
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 504 AATTGCTAAGCAAGCTCATTACCCTATTCTCGGTTTGTCGCCGATTGGATCTTGCTCGGA 563
Query 563 AAATCTTCGACGATGTCACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCGATGG 622
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 564 AAATCTTTGACGATGTAACTGATTCGAGTCTACTTACTGAGAAAGTCTGGGCAGCTATGG 623
Query 623 CGATTGGGTATTCTAGAAACGGGTCACCAAGGGACGCTTTGATCGTGTATGTGGATATGT 682
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 624 CGATTGGGTATTCTAGAAACGGGTCACCAAGAGACGCTTTGATCGTCTATGTGGATATGT 683
Query 683 TGTGTAGTTTCATTGAGCCTGGGAATTTTTCGATATCTGTGGCGTTAAAAGCTTGCGTGG 742
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 684 TGTGTAGCTTCATTGAGCCTGGGAATTTTTCGATATCCGTGGCGTTGAAAGCGTGCGTGG 743
Query 743 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGGCCAGATTGTGAAACGGAAGGGGA 802
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 744 ATTTGAAAGATCTTCGGGTTGGTAGAGGAATCCATGCCCAGATTGTGAAACGAAAGGAGA 803
Query 803 AGGTTGATCAAGTGGTGTATAATGTGCTCTTGAAGCTTTACATGGAACGTGGCTCATTTG 862
||||||| ||||| |||||||||||||||||||||||||| |||||| |||||| |||||
Sbjct 804 AGGTTGACCAAGTAGTGTATAATGTGCTCTTGAAGCTTTATATGGAAAGTGGCTTATTTG 863
Query 863 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATATTGTTACTTGGAATTCTT 922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 864 ATGATGCACGTAAGGTGTTCGATGGAATGTCTGAGAGAAATGTTGTTACTTGGAATTCTT 923
Query 923 TAATTTCGGTACTCAGCAAGAAAGTTCGGGTTCATGAGATGATTAATTTGTTCAGAAAGA 982
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 924 TAATTTCGGTACTCAGTAAGAAAGTTCGGGTTCATGAGATGTTTAATCTGTTCAGGAAGA 983
Query 983 TGCAGGAAGAGATGATTGGGTTTAGTTGGGCGACTTTGACGACAATCTTACCCGCTTGTT 1042
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 984 TGCAGGAAGAGATGATCGGGTTTAGTTGGGCGACGTTGACGACAATATTACCCGCTTGTT 1043
Query 1043 CACGTGTCGCTGCTCTTCTCACGGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1102
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1044 CACGTGTCGCTGCTCTTCTCACCGGGAAAGAGATTCATGCACAGATTCTGAAATCGAAAG 1103
Query 1103 AGAAACCTGATGTTCCGTTGCTTAATTCATTGATGGATATGTATGGGAAGTGTGGAGAGG 1162
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1104 AGAAACCTGATGTTCCATTGCTTAATTCATTGATGGATATGTATGGGAAATGTGGAGAGG 1163
Query 1163 TTGAGTATTCTCGGAGAGTCTTTGATGGGATGTTAACTAAGGATTTGACTTCATGGAACA 1222
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1164 TTGAGTATTCTCGGAGAGTCTTTGATGTGATGTTAACTAAGGATTTGGCTTCATGGAACA 1223
Query 1223 CGATTCTAAATTGTTATGCAATCAACGGAAATATCGAAGAAGTGATAAATCTGTTTGAAT 1282
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1224 TAATGCTAAACTGTTATGCAATCAACGGAAATATTGAAGAAGTGATAAATCTGTTTGAAT 1283
Query 1283 GGATGATAGAGTCAGGCGTCGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCCGGGT 1342
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1284 GGATGATAGAGTCAGGCGTTGCACCAGATGGGATTACCTTTGTTGCTTTGTTATCTGGGT 1343
Query 1343 GTAGCGATACAGGGCTAACGGAATACGGTATAAGTTTGTTTGAACGCATGAAAACTGAAT 1402
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| || |
Sbjct 1344 GTAGCGATACAGGGCTTACGGAATATGGTCTAAGTTTGTTTGAACGCATGAAAACGGAGT 1403
Query 1403 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGCCGAGCTG 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1404 TCAGAGTTTCACCGGCTTTGGAGCATTATGCTTGTTTGGTTGACATCTTGGGGCGAGCTG 1463
Query 1463 GTAAGATCGAAGAAGCAGTCAAGGTAATAGAAACAATGCCATTTAAGCCAAGTGCATCCA 1522
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1464 GTAAGATCAAAGAAGCAGTGAAGGTGATAGAAACAATGCCATTTAAGCCAAGTGCGTCCA 1523
Query 1523 TTTGGGGATCACTGCTCAACTCTTGCAGGCTCCATGGGAATGTTTCAGTGGGAGAGATTG 1582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1524 TTTGGGGATCACTGCTCAACTCTTGCAGGCTTCATGGGAATGTTTCAGTGGGAGAGATTG 1583
Score = 785 bits (425), Expect = 0.0
Identities = 484/513 (94%), Gaps = 1/513 (0%)
Strand=Plus/Plus
Query 1582 GGAACTATGTTATGGCTTCTAACATATATAGCTGAAGCAAAGATGTGGGACAATGTGGAT 1641
||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1623 GGAACTACGTTATGGTTTCTAACATATAT-GCTGATGCAAAGATGTGGGACAATGTGGAT 1681
Query 1642 AAGATTCGAGAGATGATGAAACAAAGAGGGATCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1701
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1682 AAGATTCGAGAGATGATGAAACAAAGAGGGGTCAAAAAGGAAGCTGGTTGCAGTTGGGTA 1741
Query 1702 CAGGTGAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTACGAGTTTCGTAATTCG 1761
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1742 CAGGTTAAAGACAAGATTCAAATCTTTGTTGCAGGAGGTGGTTATGAGTTTCGTAATTCT 1801
Query 1762 GATGAGTATAAGCAAGTATGGACAGAACTACAGGAAGCAATTGAAAATTCCGGTTATTCT 1821
|||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1802 GATGAGTATAAGAAAGTATGGACAGAACTACAAGAAGCAATTGAAAAATCCGGTTATTCG 1861
Query 1822 CCTGATACGAGCGTGGTGCTTCATGATGTTGATGAAGAAACTAAGGCAAATTGGGTTTGT 1881
||| ||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1862 CCTAATACGAGTGTGGTGCTTCATGATGTTGATGAAGAAACCAAAGCAAATTGGGTTTGT 1921
Query 1882 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATTCACACAGGTGAAGGGGTTCCA 1941
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1922 GGACACAGCGAGAGACTCGCGACAACCTACTCCCTAATCCACACAGGTGAAGGGGTTCCA 1981
Query 1942 ATTAGGATTACGAAGAATCTCAGAGTATGTGCAGACTGCCATTCATGGATGAAGATTGTA 2001
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1982 ATTAGGATTACCAAGAATCTCAGAGTATGTGCAGACTGTCATTCATGGATGAAGATTGTG 2041
Query 2002 TCGCAAGTAACTGGGAGAGTTATAGTCCTCAGAGACACCAAACGATTCCACCATTTCGTT 2061
|| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2042 TCACAAGTAACTAGGAGAGTCATAGTCCTCAGAGACACAAAACGATTCCACCATTTCGTC 2101
Query 2062 GCCGGCATTTGCTCATGTAAAGATTACTGGTGA 2094
| ||| || |||||||||||||| |||||||||
Sbjct 2102 GACGGAATCTGCTCATGTAAAGACTACTGGTGA 2134
Score = 159 bits (86), Expect = 8e-38
Identities = 104/113 (92%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 21 AATGATGATCGGAAAATTGTGTAGATCTGTGGGAACCGTCGGAAAGTGTGATGGTCGGCA 80
|||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 1 AATGATGATCGGGAAGTTGTGGAGATCTGTGGGAACCGTCGGAAAGTTTGATGGTCGTTA 60
Query 81 TTATGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 133
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGACGGCGTGAGGACGATGGTTGGAAAAGCCTCGAACCGAGCTGGTGTTCATG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104818737960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5