BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929220
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14360.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2425 0.0
> AT3G14360.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:4791589-4793684 FORWARD LENGTH=1714
Length=1714
Score = 2425 bits (1313), Expect = 0.0
Identities = 1500/1591 (94%), Gaps = 9/1591 (1%)
Strand=Plus/Plus
Query 14 CAGAGACATGCACAAAGACAACGAATCGGGTTCGGGTTCGAATCCGGGTCAGGGTTCGAA 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 CAGAGACATGCACAAAGACAACGATTCGGGTTCGGGTTCGAATCCGGGTCAGGTTTCGAA 60
Query 74 CTACTTGATTGTTCGACCGCACCGAGGTGGGTACAGAGACTTGTTCTGGTACGGTGTGAG 133
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 61 CTACTTGATTGTTCGACCGCACCGAGGTGGGTACATAGACTTGTTCCGGTACGGTGTGAG 120
Query 134 GGATGACGAAACGAGCAAGGCAAAGTTCTTGGAGCGGCCTGAAAACCGCGAATGGAGCAC 193
|||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 AGATGACCAAACGAGCAAGGCAAAGTTCTTGGAGATGCCTGATAACCGCGAATGGAGCAC 180
Query 194 GATGATGATTGATGAGGAAGCAGACGATCACCGTTGGGTAATTGTGGTTTCGATTCTGGT 253
||| | ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 181 GATAACGATTGATGAAGAAGCAGAGGATCACCGTTGGGTAATCGTGGTTTCGATTCTGGT 240
Query 254 TCGTAAGATCATCAGACTTCTCCGAACGCCAATGGAATTGACAGGTTTCGTCGTTGACTT 313
||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 241 TCGTAAGATTATCAGACTTCTCCGAACACCAATGGAATTCACAGGTTTCGTCGTTGACTT 300
Query 314 CTTCCTTAATCTGTTCTCTGCGAATGGTGGATTCTTCGGTTTGCTTCTCCGGTTGATTCA 373
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 CTTCCTTAATCTGTTCTCTGCGAATGGTGGGTTCTTCGGTTTGCTTCTCCGGTTGATTCA 360
Query 374 AGCGAAAGTTGTGATTCCAGAAAGAGGCTCTGTGATGTTTGTTAGTACACTTGGGCAACT 433
||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 361 AGCGAAAGTTGTGATACCAGAAAGAGGCTCTGTGACGTTTGTTAGTACAATTGGGCAACT 420
Query 434 TGATGGGAGAATTAGTCTGTTTAAGGAATGGAATTTTGTCGAACACTTGGAGGGCATTGA 493
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TGATGGGAGAATTAGTCTGTATAAGGAATGGAATTTCGTCGAACACTTGGAGGGCATTGA 480
Query 494 CTCGGTCAATTCGGGTTCTTCTGGAAAGGTTGAAATCGAACTGGGAAGTCGTGGGCTTAT 553
||||| || | |||||||| |||| |||||||| |||||||||||||||||||
Sbjct 481 CTCGG----TT---G--ATTCTGGAAGGGTTAAAATCGAATTGGGAAGTCGTGGGCTTAT 531
Query 554 GGATTTGTGTGTGATGGCGTCGAAGCTTGCGTATGAGAACGCCAAGGTTGTTGAAAACGT 613
||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||
Sbjct 532 GGATTTGTGTGTGATGGCGTCTAAGCTTGCGTATGAAAATGCTAAGGTTGTTGAAAACGT 591
Query 614 CGTTGATCTTCATTGGAAGATGAATTTGGTGGAGTTCTTGGATTGTTGGAATGATTATCA 673
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 592 CGTTGATCTTCATTGGAAGATGAATCTGGTGGAGTTCTTGGATTGTTGGAATGATTATCA 651
Query 674 GAAGCAGATGTCTACTCAAGTTTTTCTATTTACGGATAAGCAGAAAGATGCAAACTTGAT 733
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 652 GAAGCAGATGTCTACACAAGTTTTTGTGTTTACGGATAAGCAGAAAGATGCAAACTTGAT 711
Query 734 AGTAATCAGCTTCAGAGGCACTGAACCGTTTGATGCTGATGATTGGGGAACCGATTTCGA 793
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 712 AGTAATCAGCTTCAGAGGTACTGAGCCGTTTGATGCTGATGATTGGGGAACAGATTTCGA 771
Query 794 CTATTCGTGGTACGAAATCCCCAATGTGGGAAAGCTTCACATGGGATTCCTTGAAGCCAT 853
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 772 CTATTCGTGGTATGAAGTCCCCAATGTGGGAAAGCTTCACATGGGTTTCCTTGAAGCTAT 831
Query 854 GGGTTTAGGTAACAGAGACGACACTCCCACTTTCCATTACAATCTCTTCGAGCAAACCTC 913
||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 832 GGGTTTAGGCAACAGAGACGACACTACCACTTTCCATTACAATCTCTTTGAACAAACCTC 891
Query 914 TTCTGAGGAAGAGAATAGTAAAAAGAATCTCCTAGATATGGTAGAGAGAAGCGCCTATTA 973
||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 892 CTCTGAGGAAGAGAATAGTAAAAAGAATCTTCTGGATATGGTAGAGAGAAGCGCTTATTA 951
Query 974 TGCAGTTCGAATCATTCTGAAACGTTTGCTTTCGGAACACGAAAACGCTCAGTTTGTAGT 1033
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 952 TGCAGTCCGAGTCATTCTGAAACGTTTGCTTTCGGAACACGAAAACGCTCGGTTTGTAGT 1011
Query 1034 CACTGGTCATAGCTTAGGAGGTGCTTTAGCGATACTGTTTCCCACATTACTGGTGTTGAA 1093
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1012 CACTGGTCACAGCTTAGGAGGTGCTTTAGCGATACTGTTTCCCACATTGTTGGTGTTGAA 1071
Query 1094 AGAGGAAACAGAGATAATGAAGAGGCTGCTTGGAGTTTATACGTTTGGACAACCGAGAAT 1153
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1072 TGAGGAAACAGAGATAATGAAGAGGCTGCTTGGAGTTTACACGTTTGGACAACCAAGAAT 1131
Query 1154 CGGGAACAGAGATGTCGGGTTATTCATGAAAGCTCAACTGAATCAACCCGTAGACCGATA 1213
|||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1132 CGGGAACAGAGAGGTCGGGTTATTCATGAAAGCTCAACTGAATCAACCTGTGGATCGATA 1191
Query 1214 CTTCCGAGTTGTTTACTGCAACGATCTTGTCCCAAGATTGCCCTACGACGACAAAACGTT 1273
||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 1192 CTTCCGAGTCGTTTACTGCAACGATATCGTCCCGAGATTGCCCTACGACGACAAAACGTT 1251
Query 1274 CCTCTACAAACATTTTGGACTCTGTCTTTTCTATGACAGTTTCTACAACGAAACAAAAGC 1333
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1252 CCTCTATAAACATTTCGGACTCTGTCTTTTCTATGACAGCTTCTACAACGAAACAAAAGC 1311
Query 1334 AGAGGATGAGCCGGACCCGAACCCTTACGGTCTGCGTTACGAGATTCTTGGGCATGTTAT 1393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1312 AGAGGATGAGCCGGACCCGAACCCTTACGGTCTGCGTTACAAGATTCTTGGGCATGTGAT 1371
Query 1394 TGCAGTTTGGGAGTTGGTTAGAGGCTTGACGATGGGGTACACTCATGGACCGGACTACAA 1453
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1372 CGCAGTTTGGGAGTTGGTTAGAGGCTTGACGATGGGGTACACTCATGGACCAGATTACAA 1431
Query 1454 AGAAGGATGGTTTAGGATCTTGTTTAGGCTCATGGGGCTGGTGATTCCTGGTCTGTCGGA 1513
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1432 AGAGGGATGGTTTAGGATCTTGTTTAGGCTTATGGGGCTGGTGATTCCTGGTCTGTCGGA 1491
Query 1514 TCATTGCATGACTGACTACGTGAACTCGGTTAGGCTTGGACCCGATAATGAACTTCAAAT 1573
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1492 TCATTGCATGACTGATTACGTGAACTCGGTTAGGCTTGGACCCGATAATGAACTTCAGAT 1551
Query 1574 GTCCTCTCTTTGAGGAGTACTCTGttttttt 1604
||||||||||||| ||| ||||||||||||
Sbjct 1552 GTCCTCTCTTTGAAAAGTGCTCTGTTTTTTT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79316861100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5