BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929221

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14362.1 | Symbols: DVL19, RTFL10 | ROTUNDIFOLIA like 10 | c...   283    5e-76


> AT3G14362.1 | Symbols: DVL19, RTFL10 | ROTUNDIFOLIA like 10 | 
chr3:4793678-4794417 REVERSE LENGTH=740
Length=740

 Score =  283 bits (153),  Expect = 5e-76
 Identities = 181/194 (93%), Gaps = 3/194 (2%)
 Strand=Plus/Plus

Query  61   ATAA-AGAAACCCTAATTTTCGACCCCATGGCAGGATTAAAGAGAAAGTTTAACAAAGGT  119
            |||| | |||||||||  ||| | |||||||||||||||||||||||||| |||||||| 
Sbjct  66   ATAATATAAACCCTAA--TTCAATCCCATGGCAGGATTAAAGAGAAAGTTCAACAAAGGA  123

Query  120  CATGCCTTTACAAGCAAATGTGTTTCCTTGGTGAAGGAACAACGAGCTCGACTCTACATT  179
            || || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  124  CACGCTTTTACAAGCAAATGTGTTTCCTTGGTGAAGGAACAACGAGCTCGTCTCTACATT  183

Query  180  CTCCGCCGTTGTGCCACCATGCTTTGCTGCTGGTACATCCATGGCGATGAGTAGAGAGAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  CTCCGCCGTTGTGCCACCATGCTTTGCTGCTGGTACATCCATGGCGATGAGTAGAGAGAA  243

Query  240  CCCTTTGACTTCTC  253
            || ||||||| |||
Sbjct  244  CCATTTGACTCCTC  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5