BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929227
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14410.1 | Symbols: | Nucleotide/sugar transporter family p... 1786 0.0
AT1G53660.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 922 0.0
> AT3G14410.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr3:4815811-4817980 REVERSE LENGTH=1322
Length=1322
Score = 1786 bits (967), Expect = 0.0
Identities = 1040/1074 (97%), Gaps = 9/1074 (1%)
Strand=Plus/Plus
Query 1 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGATGAATTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 109 GATCATAATAATCGGTTTCAATGGCGGATCGGAGCAAAGGCTTTATGAGAGCTGAATTCG 168
Query 61 TGACCTATGCTTACATTCTTCTCTATATCGCCCTTTCTAGTGGTCAAATCTTCTTCAATA 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 169 TGACCTATGCTTACATTCTTCTCTATATCGCTCTTTCTAGTGGTCAAATCTTCTTCAATA 228
Query 121 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AGTGGGTTTTGTCATCTAAGGAAATTAATTTCCCTTATCCTCTTGGATTGACTTTACTCC 288
Query 181 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTCACCAAAGTTCTTAAGATCGTGAAGG 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 289 ATATGATCTTTTCCTCTGTCTTGTGCTTTCTTCTTACCAAAGTTCTTAAGATTGTGAAGG 348
Query 241 TTGAGGAAGGAATGACACTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGT 300
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 349 TCGAGGAAGGAATGACACTAGAAATATATGTTACGTCAGTTATTCCAATAGGTGCAATGT 408
Query 301 TTGCGATGACCCTCTGGTTGGGAAACACTGCCTACCTGTACATATCAGTTGCATTTGCGC 360
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 409 TTGCAATGACCCTCTGGTTGGGAAACACTGCCTACCTCTACATATCAGTTGCATTTGCGC 468
Query 361 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGATGTTGAAGGCTATAATGCCTGTTGCTGTGTTTATTCTTGGAGTAGCTGCTGGACTTG 528
Query 421 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTCGGTGTTTTAGTAG 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 529 AAATGATGAGCTGCAGGATGCTTTTGATAATGTCTATCATAAGTTTTGGTGTTTTAGTAG 588
Query 481 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTTCTTATGGGGAATTAAACATCAACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTG 648
Query 541 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTGGAGAAGCCCTGAGGCTAATCTTCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGT 708
Query 601 TAAACCCAATCTCTCTTATGTACTACGTGAGTCCC-TGCAGTGCTATCTGCTTGTTTGTG 659
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 709 TAAACCCAATCTCTCTTATGTACTACGTGAG-CCCATGCAGTGCTATCTGCTTGTTTGTG 767
Query 660 CCGTGGATCTTTCTAGAGAAATCGAAGATGGACGGCAATGGCCCATGGAACTTCCACTTT 719
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 768 CCGTGGATCTTTCTAGAGAAATCGAAGATAGATGGCAATGGCCCATGGAACTTCCACTTT 827
Query 720 GTTGTGTTGACGCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 779
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GTAGTGTTGACCCTTAATTCCCTCTGTACATTTGCCCTCAACTTGTCGGTTTTCTTGGTG 887
Query 780 ATTTCTCACACGAGCGCTCTCACTATCCGAGTTGCTGGGGTTGTCAAGGATTGGGTGGTT 839
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 888 ATTTCTCACACGAGTGCTCTCACTATCCGAGTTGCTGGCGTTGTCAAGGATTGGGTGGTT 947
Query 840 GTCTTGGTATCAGCTCTTCTCTTTGCCGACACAAAACTCACAATCATCAATCTTTTCGGT 899
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 GTCTTGGTGTCAGCTCTTCTCTTTGCCGACACGAAACTCACAATCATCAATCTTTTCGGT 1007
Query 900 TACGCCATTGCCATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 959
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 TACGCCATCGCTATTGCCGGTGTAGCGGCTTATAACAACCATAAGCTGAAGAAGGAAGCA 1067
Query 960 TCCAAAGTT---ACCACAGAAACTTCAGGAGATGGTGAATCAATACCGTTGGTGTCACA- 1015
||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1068 TCCAAAGTTGTTACCACAGAAACTCCAGGAGATGCTGAATCAATACCGTTGGTGTCACAA 1127
Query 1016 GACCAATACTAATTCAGAGAGATGATGATAG-CCGAGAAAATGTAGCTTCTCAT 1068
| ||||||||| ||||||||||||||| | |||||||||||||| |||||||
Sbjct 1128 GGT-AATACTAATACAGAGAGATGATGAT-GTCCGAGAAAATGTAGTTTCTCAT 1179
> AT1G53660.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:20034032-20035946 FORWARD LENGTH=999
Length=999
Score = 922 bits (499), Expect = 0.0
Identities = 794/934 (85%), Gaps = 29/934 (3%)
Strand=Plus/Plus
Query 29 TCGGAGCAAAGGCTTTATGAGAGATGAA-TTCGTGACCTATGCTTACATTCTTCTCTATA 87
||||| || ||||||| | ||||| ||| | ||||| ||||||| |||||||||||| |
Sbjct 15 TCGGATCAGAGGCTTTCTTAGAGAAGAACAT-GTGACGTATGCTTCCATTCTTCTCTACA 73
Query 88 TCGCCCTTTCTAGTGGTCAAATCTTCTTCAATAAGTGGGTTTTGTCATCTAAGGAAATTA 147
|| | || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 74 TCACTCTCTCTAGCGGTCAAATCTTCTTCAATAAGTGGGTATTGTCATCTAAGGAAATAA 133
Query 148 ATTTCCCTTATCCTCTTGGATTGACTTTACTCCATATGATC-TTTTCCTCTGTCTTGTGC 206
| ||||||||||| ||||||||||| ||||| || |||| | ||||||||||| |||||
Sbjct 134 ACTTCCCTTATCCACTTGGATTGACATTACTTCACATGA-CTTTTTCCTCTGTTTTGTGT 192
Query 207 TTTCTTCTCACCAAAGTTCTTAAGATCGTGAAGGTTGAGGAAGGAATGACACTAGAAATA 266
||||| ||||| || ||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 193 TTTCTCCTCACGAAGGTTTTTAAGGTCATGAAGGTTGAGGAAGGAATGACATTAGAAATA 252
Query 267 TATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCGATGACCCTCTGGTTGGGAAAC 326
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 253 TATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTATGGTTAGGAAAC 312
Query 327 ACTGCCTACCTGTACATATCAGTTGCATTTGCGCAGATGTTGAAGGCTATAATGCCTGTT 386
||||| || || |||||| | ||||||||| | || |||||||| || || |||||||||
Sbjct 313 ACTGCTTATCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAAGCCATCATGCCTGTT 372
Query 387 GCTGTGTTTATTCTTGGAGTA-GCTGCTGGACTTGAAATGATGAGCTGCAGGATGCTTTT 445
||||||||||| |||||||| | || ||| |||||||| |||||||||| |||||||||
Sbjct 373 GCTGTGTTTATACTTGGAGTTTG-TGTTGGGCTTGAAATAATGAGCTGCAAGATGCTTTT 431
Query 446 GATAATGTCTA-TCATAAGTTTCGGTGTTTTAGTAGCTTCTTATGGGGAATTAAACATCA 504
||||||||| | |||||||||| || |||||||| | |||||||| |||||||||||||
Sbjct 432 GATAATGTC-AGTCATAAGTTTTGGCGTTTTAGTCTCGTCTTATGGTGAATTAAACATCA 490
Query 505 ACTGGATTGGAGTGGTTTACCAAATGGGTGGTGTTGTTGGAGAAGCCCTGAGGCTAATCT 564
||||| ||||||| |||||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct 491 ACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCCTTGAGGCTAATCT 550
Query 565 TCATGGAACTTCTTGTCAAGAGGAAGGGCATCAAGTTAAACCCAATCTCTCTTATGTACT 624
| |||||| ||||||| |||||||| |||||||| ||||| ||| |||||||||||||||
Sbjct 551 TAATGGAAATTCTTGTTAAGAGGAAAGGCATCAAATTAAATCCACTCTCTCTTATGTACT 610
Query 625 ACGTGAGTCCC-TGCAGTGCTATCTGCTTGTTTGTGCCGTGGATCTTTCTAGAGAAATCG 683
|| |||| ||| ||||| || || |||||||| | || ||||| ||||| ||||| |||
Sbjct 611 ACATGAG-CCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTTGAGAAGTCG 669
Query 684 AAGATGGACGGCAATGGCCCATGGAACTTCCACT-TTGTTGTGTTGACG-CTTAATTCCC 741
|||||||| | | ||||||||| || | || |||| |||| | |||||||| |
Sbjct 670 AAGATGGAT---A----C--ATGGAACTTTCA-TGTTCTTGTCTTGA-GTCTTAATTCGC 718
Query 742 TCTGTACATTTGCCCTCAACTTGTCGGTTTT-CTTGGTGATTTCTC-ACACGAGCGCTCT 799
| ||||||||||| ||||| ||||||||||| |||| |||| |||| | || || |||||
Sbjct 719 TATGTACATTTGCTCTCAATTTGTCGGTTTTTCTTG-TGATATCTCGA-ACAAGTGCTCT 776
Query 800 CACTATCCGAGTTGCTGGGGTTGTCAAGGATTGGGTGGTTGTCTTGGTATCAGCTCTTCT 859
||||||||| ||||||| || || || |||||| ||||||| ||||| |||||||||||
Sbjct 777 TACTATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCTCTTCT 836
Query 860 CTTTGCCGACACAAAACTCACAATCATCAATCT-TTTCGGTTACGCCATTGCCATTGCCG 918
||||||||| ||||||||||||||||||||||| ||| ||||| ||| ||||||| | |
Sbjct 837 CTTTGCCGAGACAAAACTCACAATCATCAATCTCTTT-GGTTATGCCGTTGCCATCGTTG 895
Query 919 GTGTAGCGGCTTATAACAACCATAAGCTGAAGAA 952
||||||| | |||||||||||||||| |||||
Sbjct 896 GTGTAGCTACGTATAACAACCATAAGCCAAAGAA 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5