BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929230

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   377    2e-104


> AT3G14430.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to oxidative stress; 
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 16 Blast hits 
to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:4824196-4824837 REVERSE 
LENGTH=539
Length=539

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 239/256 (93%), Gaps = 2/256 (1%)
 Strand=Plus/Plus

Query  1    CCGGCGGGAGGAGTTTT-TCGAGGATGATCGGGCGACGTGCTGGAACGAATCGAGTCGGT  59
            |||| |||| || ||||  ||| |||||||||||||||||||||||| ||||||||||||
Sbjct  83   CCGGAGGGA-GAATTTTACCGACGATGATCGGGCGACGTGCTGGAACTAATCGAGTCGGT  141

Query  60   ATGAGAAGAGATGACTCTCTTCTGACTCGGTTTGTTGACTCAGTATTCTATTTCTTCCGA  119
            ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  142  ATGAGGAGAGACGACTCTCTTCTGACTCGGTTTGTTGACTCAGTGTTCTATTTCTTCCGA  201

Query  120  TTGGCTGAGTTTGAGATCTTGTTTGTGCTCTTCATGCTTATAACCTACATCATCTTCAAA  179
            || ||||||||||||||| |||||||||||||||||||||| |||||| | || ||||||
Sbjct  202  TTAGCTGAGTTTGAGATCCTGTTTGTGCTCTTCATGCTTATTACCTACGTTATTTTCAAA  261

Query  180  GATCTGACGTCGAGGCCGGAGTATAATCGGATTCTTGTGGAGAAACCCGGTGGATCTGAC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  262  GATCTGACGTCGAGGCCGGAGTATAATCGGATTCTTGTGGAGAAACCCGGTGGATCTGAC  321

Query  240  ATCTGGCCGTTCTAAA  255
            ||||||||||| ||||
Sbjct  322  ATCTGGCCGTTTTAAA  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5