BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929248
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14700.1 | Symbols: | SART-1 family | chr3:4940318-4941398 ... 917 0.0
> AT3G14700.1 | Symbols: | SART-1 family | chr3:4940318-4941398
FORWARD LENGTH=979
Length=979
Score = 917 bits (496), Expect = 0.0
Identities = 590/635 (93%), Gaps = 8/635 (1%)
Strand=Plus/Plus
Query 3 TCTCAGTCCAAAGTAGCTATGAAGAAGGATTCTG-TGAGGAAGAATAAGAAACTCGTTAT 61
||||||||||||||||||||||| || ||||| | ||||||||||||||||| | |||||
Sbjct 292 TCTCAGTCCAAAGTAGCTATGAAAAAAGATTC-GATGAGGAAGAATAAGAAATTGGTTAT 350
Query 62 AAATATTGCTCTAGATAAAGAAGTTCTTGCTTCGCGATTAGAAGCTGATCATGATCTTGG 121
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 351 AAATATTGCTCTAGATAAAGAAGTTCTTGCTTCGAGAGTGGAAGCTGATCATGATCTTGG 410
Query 122 TTCTCTaagagatgagaaagagaggtttgaatcatcagagagaagaagagaTGTGGTTTG 181
|||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 411 TTCTGTAAGAGATGAGAAAGAGAGGCTTGAATCATCAGAGAGACGAAGAGA---GGTTTG 467
Query 182 TTCCAAAGCTGAAGATATTTTTGATAAGGCAACTAATGATCATTCTAGTGTTAGAGGAGA 241
||||||||||||||||||| |||||||||| | | || |||||||||| |||||||||||
Sbjct 468 TTCCAAAGCTGAAGATATTGTTGATAAGGCCATTGATAATCATTCTAGGGTTAGAGGAGA 527
Query 242 TGGGATCATGCGGGAGGTTGATGTCGGAACAGGATTATCGGGCGCGTTAAACCGTCTGAG 301
|||||| |||||||| | ||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 528 TGGGATTATGCGGGAAGCTGATGTCGGGACAGGGTTATCGGGCGCGTTAAACCGTCTTAG 587
Query 302 AGAGCAAGGAACTTTCAAGGAGGAAAGCAAGATTGTAGGTGTTAAGGAC---AATCATGA 358
||||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||
Sbjct 588 AGAGCAAGGAACTTTCAAGGAGGAAGGCAAGGTTGTTGGTGTTAAGGACAATAATCATGA 647
Query 359 AGATGACAGATTCAAAGATAGATTTAAGGATATAGAGATTCAGAGGGCGGACAAGTGGGG 418
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 648 AGATGACAGATTCAAAGATAGATTTAAGGATATACAGATTCAGAGGGTGAACAAGTGGGG 707
Query 419 AAGGATATTGACTGAGAAGGAAGCGTATCGGTCACTGTGTCATAGATTCCATGGGAAGGG 478
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 708 AAGGATAATGACTGAGAAAGAAGCGTATCGGTCACTGTGTCATGGATTCCATGGGAAGGG 767
Query 479 GCCTGGGAAGAAGAAGCAAGAGAAACAGAGGAAGAAGCATGAAGATAAGTCAAAACAGAT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ACCTGGGAAGAAGAAGCAAGAGAAACAGAGGAAGAAGCATGAAGATAAGTCAAAACAGAT 827
Query 539 GGAATCTTCAGAGAGAGCTGTGGAAAGAATTAGAGAAGTTCATGCCATATCCAAGAGTCC 598
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||
Sbjct 828 GGAATCTTCAGAGAGATCTGTGGAAAGAATAAGAGAAATTCATGCCATATCCAAGACTCC 887
Query 599 TTACATTGTTCTCTAATCATAAACTTCTCTTTGAT 633
||||||||||||||| |||||||||||||||||||
Sbjct 888 TTACATTGTTCTCTAGTCATAAACTTCTCTTTGAT 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5