BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929254

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   856    0.0  


> AT3G14760.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant 
structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 
two leaves visible; Has 63 Blast hits to 63 proteins in 13 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr3:4956349-4957255 FORWARD LENGTH=808
Length=808

 Score =  856 bits (463),  Expect = 0.0
 Identities = 520/548 (95%), Gaps = 2/548 (0%)
 Strand=Plus/Plus

Query  1    GACCCCAAATTTAGCAAACAATGGAAGCCTTGTGGAAGTTGGAGGAGAAACTGAAGCTAA  60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  72   GACCCCAAATTTAGCAAAAAATGGAAGCCTTGTGGAAGTTGGAGGAGAAACTGAAGCTAA  131

Query  61   CAACGAAAGAAGCTGTTGTGATCTTGGTCGGAACAGCGGCTGCGGTAACGTTACTCTGCA  120
            | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  132  CTACGAAAGAAGCCGTTGTGATCTTGGTCGGAACAGCGGCTGCGGTAACGCTACTCTGCA  191

Query  121  TAGCTGCAGCGTTTCTCAACCGCAATTCTCGAGGGAAGCAAGTAGCAGACGCAGAGTGGG  180
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  192  TAGCCGCAGCGTTTCTCAACCGCAATTCTCGAGGGAAGCAAGTAGCAGACGCAGAGTGGG  251

Query  181  CGTCCGAAACAGCGTTTGCGTCAAGGACAATGGAGGAAAAGAGGAAATGTAAGTGGAGCA  240
            |||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  252  CGTCTGAAACAGCGTTTGGGTCAAGGACTATGGAGGAAAAGAGGAAATGTAAGTGGAGCA  311

Query  241  AAGTGAAGAAG-ACGTTGATGGGTTCGTTTTGCTGGAGCTCTGCAGCGAAGTGGATGGAG  299
            ||||||| ||| |||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct  312  AAGTGAA-AAGAACGTTGATGGGTTCTTTTTGTTGGAGCTCTGCTGCGAAGTGGATGGAG  370

Query  300  ATGGAAACAAGGCGGCCGCCACCATTGCTTGCGGCTAAAGAAAGGAGTCTTAACGCCGTT  359
            |||||||||||||||| ||||||||||||||||| |||||||||||||||||| || |||
Sbjct  371  ATGGAAACAAGGCGGCAGCCACCATTGCTTGCGGTTAAAGAAAGGAGTCTTAATGCGGTT  430

Query  360  GATCCTGTTTGGCAGCGACCAATTCTGATGGGTGAGAAATGTGAATTGCCTCGGTTTAGC  419
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  GATCCGGTTTGGCAGCGACCAATTCTGATGGGTGAGAAATGTGAATTGCCTCGGTTTAGC  490

Query  420  GGCCTTATATTGTATGATGAACGCGGCCATCCGCGTCATCATCCTCAACTTCAAGAACAA  479
            ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||
Sbjct  491  GGCCTTATATTGTATGATGAATGTGGCCATCCGCGTCATCATCCTCAGCTTCAAGAAAAA  550

Query  480  GTAAAACAAATTTCTGTGGTAAGAACAACGCTGAGAGATTTGCTTTGATAGTGGTTTTCT  539
            |||||||| | |||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct  551  GTAAAACAGAGTTCTGTGGTAAGAACAACTCTGAGAGATTTGCTTTGACAGTGATTTTCT  610

Query  540  CTACAAGG  547
            ||| ||||
Sbjct  611  CTAGAAGG  618



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26222224734


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5