BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929255
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14770.1 | Symbols: SWEET2, AtSWEET2 | Nodulin MtN3 family p... 1236 0.0
> AT3G14770.1 | Symbols: SWEET2, AtSWEET2 | Nodulin MtN3 family
protein | chr3:4957334-4959704 REVERSE LENGTH=1666
Length=1666
Score = 1236 bits (669), Expect = 0.0
Identities = 726/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 1 TTTAAGACAGAGAAGCTTCCTCATGGATGTTTTTGCTTTCAATGCTTCTTTATCCATGTG 60
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTAAGACAGAG-AG-AAGCTCATGGATGTTTTTGCTTTCAATGCTTCTTTATCCATGTG 540
Query 61 TAAAGATGTTGCCGGAATCGCAGGCAACATATTTGCATTTGGGCTCTTCGTTTCACCAAT 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TAAAGATGTTGCCGGAATCGCAGGCAACATATTTGCATTTGGACTCTTCGTTTCACCAAT 600
Query 121 GCCAACGTTTAGAAGGATCATGAGGAACAAATCGACGGAGCAATTCTCCGGTTTACCATA 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCAACGTTTAGGAGGATCATGAGGAACAAATCGACGGAGCAATTCTCCGGTTTACCATA 660
Query 181 CATTTACGCTCTCTTAAACTGCTTGATCTGTCTTTGGTATGGCACACCTTTCGTATCACA 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 661 CATTTACGCTCTCTTAAACTGCTTGATCTGCCTTTGGTATGGCACACCTTTCATATCACA 720
Query 241 CAGCAATACCATGCTTATGACTGTGAATTCTGTTGGAGCCACTTTTCAGCTTTGCTACAT 300
||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 721 CAGCAATGCCATGCTTATGACTGTGAATTCCGTTGGAGCTACGTTTCAGCTTTGCTACAT 780
Query 301 TATCCTATTCATCTTGCATACAGACAAGAAGAACAAGATGAAGATGCTTGGTTTGCTTTT 360
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATCCTCTTCATCATGCATACAGACAAGAAGAACAAGATGAAGATGCTTGGTTTGCTTTT 840
Query 361 TGTGGTGTTTGCTGTGGTTGGAGTGATTGTTGCTGGAAGTTTGCAGATACCTGACCAGCT 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TGTGGTGTTTGCTGTGGTTGGAGTGATTGTAGCTGGAAGTTTGCAGATACCTGACCAGCT 900
Query 421 CACACGATGGTACTTTGTCGGGTTCTTGAGCTGCGGTTCTCTTGTTTCAATGTTTGCCTC 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CACACGGTGGTACTTTGTCGGGTTCTTGAGCTGCGGTTCTCTTGTTTCAATGTTTGCCTC 960
Query 481 GCCTTTGTTTGTTATCAACCTAGTGATTCAGACTAAGAGCGTTGAGTTTATGCCGTTTTA 540
||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 GCCGTTGTTTGTTATTAACCTAGTGATTCGGACTAAGAGCGTTGAGTTTATGCCGTTTTA 1020
Query 541 TCTCTCGCTATCGACTTTCTTGATGAGTGCTTCCTTCCTTCTTTACGGGTTATTCAATAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 TCTCTCGCTATCGACTTTCTTGATGAGTGCTTCCTTCCTTCTTTACGGGTTATTCAACAG 1080
Query 601 CGACGCCTTTGTTTATACACCAAATGGAATAGGAACGATTCTTGGTATTGTGCAGCTGGC 660
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 CGATGCCTTTGTTTATACACCAAATGGAATAGGAACGATTCTTGGCATTGTGCAGCTGGC 1140
Query 661 TTTGTACTGTTACTACCACTGGAATTCTATAGCAGAAGaaaaaaaaGAGCCTTTGATTGT 720
||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 1141 TTTGTACTGTTACTACCACAGGAATTCTATAGAAGAAGAAACAAAAGAGCCTTTGATTGT 1200
Query 721 TTCTTATGTGTGAGGTTCGCACAAAGAAGCAAAT 754
|||||| ||||||||||||| |||||||||||||
Sbjct 1201 TTCTTACGTGTGAGGTTCGCGCAAAGAAGCAAAT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5