BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929257

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G14780.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Transposa...   259    1e-68


> AT3G14780.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Transposase, 
Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis 
thaliana protein match is: glucan synthase-like 4 (TAIR:AT3G14570.2); 
Has 315 Blast hits to 313 proteins in 50 species: 
Archae - 2; Bacteria - 16; Metazoa - 11; Fungi - 7; Plants 
- 181; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink). 
| chr3:4961806-4963544 REVERSE LENGTH=1214
Length=1214

 Score =  259 bits (140),  Expect = 1e-68
 Identities = 190/213 (89%), Gaps = 7/213 (3%)
 Strand=Plus/Plus

Query  1    TCCCACCGACGTGTTTTTCTTGATATGGATCCCATCTTACCCG-AAGATTCGCC---AAC  56
            ||| |||||  ||||||||||||||||||||||||| | |||| ||||||||||   |||
Sbjct  109  TCCTACCGA--TGTTTTTCTTGATATGGATCCCATCCT-CCCGGAAGATTCGCCGGCAAC  165

Query  57   CAGCCAGTTCACGAGACCACTCGCTTTTCAGGAACAATATGTGTGGGAACCCTACGACAG  116
            ||||  |||||||||||| ||||||||  | ||||||||||||||||| ||||| |||||
Sbjct  166  CAGCTTGTTCACGAGACCCCTCGCTTTGAAAGAACAATATGTGTGGGAGCCCTATGACAG  225

Query  117  CGAGAAGCTTCCGGAGACATTAGCCTCAGAGATTCAGAGGTTTCTTCTTGTAGCAAACTT  176
            ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct  226  CGAGAAGCTTCCGGAGACATTAGCCTCAGGGATTCAAAGGTTTCTTCGTGTAGCAAACTT  285

Query  177  GGTTGAGTCTGAAGAACCTCGTGTTTCTTATCT  209
            |||||||||||| || ||||||||| |||||||
Sbjct  286  GGTTGAGTCTGATGATCCTCGTGTTGCTTATCT  318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5