BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929273
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14920.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminy... 2771 0.0
> AT3G14920.1 | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine
amidase A protein | chr3:5018275-5020273 FORWARD
LENGTH=1999
Length=1999
Score = 2771 bits (1500), Expect = 0.0
Identities = 1736/1851 (94%), Gaps = 12/1851 (1%)
Strand=Plus/Plus
Query 21 ATGActtcctctcttcctccacccatcatcttcttcaccgtcttcttcttcgccgtccat 80
|||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||
Sbjct 1 ATGACTTCCTCTCTTCCTCCACTCATCTTCTTCTTCACCG---TCTTCTT---CGTCCAC 54
Query 81 tctctctccGCCGTCTCCGATCTCCACGAAACCAGATCACGTTTCAAAcctcctcagttc 140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 55 TCTCTCTCCGCCGTCTCCGATCTTCACGAAACCAGATCACGTTTCAAACCTCCTCAGTTC 114
Query 141 tctcctctcttcttctcttctcctctcCAAAACGTCACAAAATCCCCTACTCGCTACTTC 200
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 115 TCTCCTCTCTTCTTCTCCTCTCTTCCCCAAAACGTCACAAAATCCCCTACTCGCTACTTC 174
Query 201 GAAGTTCAAAAACCTCCCGTCCCAAATCTGCCGACAGCTCAACCACCGTGTTCGTATCGA 260
|| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
Sbjct 175 GAGGTTCAAAAACCTCCCGTTCCAAATCTCCCGACAGCTCAACAACCGTGTTCGTATCAA 234
Query 261 ATTCTCCACCATGACTTTGGTTACACCTATGCTAAACCACCGGTTCTCTCCAATTACACT 320
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 235 ATCCTCCACCATGACTTTGGCTACACCTACGCTAAACCACCGGTTCTCTCCAATTACACA 294
Query 321 CTTCCCTCTCACTGCTCCTCTCGAGAATTCTCCAAAATCGTCCTCGAATTCAAATCCACT 380
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTCCCCTCTCACTGCTCCTCTCGAGAATTCTCCAAAATCGTCCTCGAATTCAAATCCACC 354
Query 381 AGCCAAGGACGACAATTCGATCGTATATTCGGTGTTTGGCTTGACGGCGTTAAGATTCTC 440
||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 355 AGCCAAGGAAGACAATTCGATCGTATCTTCGGTGTTTGGCTTGACGGCGTTGAGATTCTC 414
Query 441 CGGAGCTGCACCGCCGAGCCTAGACCAAACGGAATTGTTTGGTCTGTTGAGAAAGATGTG 500
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 CGGAGCTGCACCGCCGAGCCTAGACCAAACGGAATTGTTTGGTCTGTCGAGAAAGATGTG 474
Query 501 ACTAAGTATCACTCTTTACTCGTCAAGAACGAGACTCAGCTTCTCTCTGTTTATCTTGGT 560
|| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 475 ACCAAGTATCACTCTTTGCTCGTCAAAAACGAGACTCAGATTCTCTCTGTTTATCTTGGT 534
Query 561 AATCTTATTGATAAAACCTATACTGGTGTTTACCATGTTGATGTGATCTTCCATTTCTAT 620
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 AATCTTATCGATAAAACCTATACTGGTGTTTACCATGTTGATGTCATCTTCCATTTCTAT 594
Query 621 CAATTCGATAGAAATCTTGAAGATCCTTCTGGTTATAGCTCTCCTCGAGCTGATATGATC 680
|||| ||| || |||||| ||||| |||||||||||||||| || |||||||||||||
Sbjct 595 CAATCCGAAAGTAATCTTCAAGATGTTTCTGGTTATAGCTCTTCTAAAGCTGATATGATC 654
Query 681 CTGCCGATTTCGAGAAATCTTCCGTTGAACGATGGATTGTGGTTTGAAATTGTGAATTCG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTGCCGATTTCGAGAAATCTTCCGTTGAACGATGGATTGTGGTTTGAAATTGTGAATTCG 714
Query 741 AATGATTCTAAGTATAAGGAATTTGAAATTCCTAGGAATGTGTATAGAGCTATTCTTGAG 800
|||||| | ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||
Sbjct 715 AATGATACCAAGTATAAGGAGTTTGAGATTCCTAGGAATGTTTATAGAGCTGTGCTTGAG 774
Query 801 GTTTATGTTTCTTTCCATGAGAATGATGAGTTTTGGTATGGAAATCTTCCTAATGATT-T 859
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 775 GTTTATGTTTCTTTTCATGAGAATGATGAGTTTTGGTATGGAAATCTTCCTAATGACTAT 834
Query 860 CGTTACTGCTAATAATCTCAGTGTTGCTGGTAACGGACCTTTTAGAGAAGTTGTGGTTAG 919
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 835 -GTTACTGCTAATAATCTTAGTGTTGCTGGTAATGGACCTTTTAGAGAAGTTGTGGTTAG 893
Query 920 TCTTGACGGTGATATTGCTGGTGCGGTTTGGCCTTTCCCTGTTGTTTTCACTGGAGGGAT 979
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 894 TCTTGACGGTGATATTGCTGGTGCTGTTTGGCCTTTCCCTGTTGTTTTCACCGGTGGGAT 953
Query 980 CAATCCTTTGCTCTGGAGACCAATCACTGCTATTGGCTCTTTTGATTTGCCGAGTTATGA 1039
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 954 TAATCCTTTGCTTTGGAGACCAATTACTGCTATTGGCTCTTTTGATTTGCCGAGTTACGA 1013
Query 1040 TATCGAGATCACACCGTTCTTGGGAAGTTTGTTGGATGGGAAGACTCATAAGGTGGGGTT 1099
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1014 TATCGAGATCACGCCGTTCTTGGGAAGTTTGTTAGATGGGAAGACTCATAAGGTGGGGTT 1073
Query 1100 TAGTGTAACAAATGCGTTGAATGTTTGGTATATCGATGCGAATTTGCATCTTTGGTTGGA 1159
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 TAGTGTTACAAATGCTTTGAATGTTTGGTATATTGATGCGAATTTGCATCTTTGGTTGGA 1133
Query 1160 TCAAGAGAAGGAGATAGTTGAAGGGAAGGTGTTGGAGTTCAGTAGAAGCTCTCTGGAGAT 1219
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1134 TCAAGAGAAGGAGATTGTTGAAGGGAAGGTGTTGGATTTCAGTAGAAGCTCTCTGGAGAT 1193
Query 1220 TAGCTCTGTCTCGGATTTTAAAGGCTTGAATGGAAACTTCACTACGAAAGCAAAGAGGTC 1279
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1194 TAGCTCTGTCTCGGATTTTAAAGGCTTGAATGGAAACTTCACCACGAAAGCAAAGAGGTC 1253
Query 1280 GATAACTTCGATCGGGTTGGTTAAATCCTCTCATGGGGACATTATAACTAATGCCAATCA 1339
|||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1254 GATAACTTCGGTTGGGTTGGTTAAATCTTCTCATGGGGACATTATAACTAATGCTAATCA 1313
Query 1340 AGAATTTAGCTACG-GAAACACGATGGTTTTAGGTAAAGATGGGAACTTGCAGATCATAG 1398
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AGAATTTAGCTACGAGAA-CAAGATGGTTTTAGGTAAAGATGGGAACTTGCAGATCATAG 1372
Query 1399 ATCAGTTGATCCAAGCCGATGATCGTATTCACGCCAAGAGAGCCTCGAGAGAGATCTACT 1458
|||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1373 ATCAATTGATCCAAGCTGATGATCGTATTCATGCCAAGAGAGCCTCCAGAGAGATCTAC- 1431
Query 1459 GC-GCAAAATCCATCAAGAGCTTTCCCTTTTACCTCGACTCTGACTCTTTGGAGCAACAG 1517
|| || ||||| |||||||| ||||| |||||||||||||||||| |||||||||| |||
Sbjct 1432 GCAGCGAAATCTATCAAGAGTTTTCCTTTTTACCTCGACTCTGACACTTTGGAGCAGCAG 1491
Query 1518 AATAACACTTCTCTGGAGATTGCGAATGTCAAGATGGCATTCAACGAGGAGAGATCAGAG 1577
|||||||| | ||||| | | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1492 AATAACACATATCTGGCGGTAGCGAATGTCTCGATGGCATTCAACGAGGAGAGATCAGAG 1551
Query 1578 AGCGACAACGGGTTGATGAGAACATTCAAGAGCAAGCTTGAAAACAAGCAAGAAGGGCAA 1637
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1552 AGCGACAAAGGGTTGATGAGAACGTTTAAGAGCAAGCTTGAAAACAAGCAAGAAGGGCAA 1611
Query 1638 GGAGTGATGGTGGTGAAGAATAACTTAGTGGTCAATGGATATGGAAGCACACAACAAGTG 1697
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 GGAGTAATGGTGGTGAAGAATAACTTAGTGGTCAGTGGATATGGAAGCACACAACAAGTG 1671
Query 1698 TATAACTATGTTGGAAGTGACCAATGTTACTTCAGAAACATCAGTAGCTCCAACTACACT 1757
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1672 TATAACTATGTTGGAAGTGACCAATGTTACTTCAGAAACATCAGTAGTTACAACTACACT 1731
Query 1758 ATTCTATATGACAAGCTTGAAAGTGTTTGCAAGaaaaaaaCACTGAAGCTGCCGCCACGG 1817
||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 1732 ATTCTCTATGACAAGGTTGAATCTGTTTGCAAGAAGAAAACACTGAAGCTGCCTCCACGG 1791
Query 1818 CTCGAGCATCTACCAAGACAACAACCCTTACTGGCTTAATATATAACCAGA 1868
||||||||| ||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 1792 CTCGAGCATTTACCAAGACAACACCCCTTACTTGCTTGATATATGACCAGA 1842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5