BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929279
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14960.1 | Symbols: | Galactosyltransferase family protein ... 1650 0.0
AT1G53290.1 | Symbols: | Galactosyltransferase family protein ... 1011 0.0
> AT3G14960.1 | Symbols: | Galactosyltransferase family protein
| chr3:5035896-5038007 REVERSE LENGTH=1444
Length=1444
Score = 1650 bits (893), Expect = 0.0
Identities = 1006/1061 (95%), Gaps = 6/1061 (1%)
Strand=Plus/Plus
Query 1 GATCCGTTCGTTAACAAAATCATGCCATCTTCTCCTAAGCTGTTTAACGCGCGGCCATCA 60
|||||| ||||| ||||||||||| |||||||||| ||||||||| ||||||| ||||||
Sbjct 38 GATCCG-TCGTT-ACAAAATCATGTCATCTTCTCCCAAGCTGTTTCACGCGCGTCCATCA 95
Query 61 CTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTTGCTATCGGTCTAACC 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 96 TTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTCGCTATCGGTCTAACC 155
Query 121 GGTTTCCTTTTCGGATTATCCACGATTCTTTTCCCGGGTCTCCGGTTATCCGGCCGGACC 180
|||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||
Sbjct 156 GGTTTCCTTTTCGGATTATCAACGATCCTTTTCCCTGGTCTCCGGTTATCTGGCCGGTCC 215
Query 181 TGCCTCACCAACTTGCCTCCGAAGACGGTTAAAATCGCCTGGGACGTCGCTGGAAATAGT 240
||||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 216 TGCCTCACCAACTTGCCACCGAAGACTGTTAAAATCGTCTGGGACGTCGCTGGTAATAGT 275
Query 241 ATCGTTAACGGCGAAGTCAAAAGGCACAAGGTTATGGGATTCGTCGGAATCCAGACCGGA 300
|||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 276 ATCGTTAATGGCGAAGTCAAGAGGCACAAAGTGATGGGATTCGTCGGAATCCAGACCGGA 335
Query 301 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 395
Query 361 GGCCTTCGACGATTGGAGGAATCAACAGGATTGGCCATTAGATTTATTATAGGCAAAACC 420
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 396 GGCCTTCGAAGATTGGAAGAATCAACAGGATTAGCCATTAGATTTATTATAGGCAAAACC 455
Query 421 AAAGATGAGGCCAAAATGGCTGAGCTTAGAAGGGAAATCGCAGA-GTACGATGACTTTAT 479
||||| ||||||||||||| |||||| ||||| ||| | ||| | |||||||||||||||
Sbjct 456 AAAGACGAGGCCAAAATGGTTGAGCTGAGAAGCGAAGTTGCA-ATGTACGATGACTTTAT 514
Query 480 ACTGCTAGATCTCGAGGAGGAGTATAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 539
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 515 ACTGCTCGATATCGAGGAGGAGTACAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 574
Query 540 AGCTGCATACGC-CTTATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 598
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGCTGCATATGCAC-TATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 633
Query 599 TGAGGCCAGATCGGTTGTCTTTGCTGTTGGCTAAAGAGCGGACTCACTCGCAGACGTACC 658
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 634 TGAGGCCAGATCGTTTGTCTTTACTGTTGGCTAAAGAGCGGGGTCACTCGCAGACATACC 693
Query 659 TCGGATGCCTGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTCAAATGGTATGAACCTT 718
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 694 TTGGATGCATGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTTAAATGGTATGAACCTT 753
Query 719 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 813
Query 779 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAGCA 838
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 814 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAACAACAGTTTCAGGATGTTTAGCA 873
Query 839 ATGAGGACGTGACTATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAATCTTC 898
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 874 ATGAGGACGTGACCATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTC 933
Query 899 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCGAAAT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 934 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAAT 993
Query 959 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAACCTAGAGAGCTGCT 1018
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 994 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCT 1053
Query 1019 CAAAAACCCCGACTTTGCCATCAGATGATGAATGATCTACC 1059
|||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1054 CAAAAAGCCCGACTTTGCCATCGGATGATGAGTGATCTACC 1094
> AT1G53290.1 | Symbols: | Galactosyltransferase family protein
| chr1:19871299-19873490 FORWARD LENGTH=1331
Length=1331
Score = 1011 bits (547), Expect = 0.0
Identities = 880/1041 (85%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 28 TCTTCTCCTAAGCTGTTTAACGCGCGGCCATCACTCTTCACGCGCCGATCGACGCCT-TT 86
||| ||| |||||| ||| |||||||| |||||||| |||||||||||| ||| || ||
Sbjct 61 TCTCCTCGTAAGCTATTTCACGCGCGGTCATCACTCGCCACGCGCCGATCAACGGCTCTT 120
Query 87 GATCGTCTTCACCTCTCTTGCTATCGGTCTAACCGGTTTC-CTTTTCGGATTATCCACGA 145
| |||| || || || || ||||| || | |||||||| | ||| ||| | || |
Sbjct 121 G-TCGTATTAACTTCCCTAGCTATTGGAATCGCCGGTTTCACATTT-GGACTCGCCGTAA 178
Query 146 TTCTTTTCCCGGGTCTCCGGTTATCCGGCCGGACCTGCCTCACCAAC-TTGCCTCCGAAG 204
||||| | ||||||||||| ||| |||| || | ||| | || ||| | |||||||||
Sbjct 179 TTCTTATACCGGGTCTCCGATTAACCGGTCGTAATTGCTTGACGAACACT-CCTCCGAAG 237
Query 205 ACGGTTAAAATCGCCTGGGACGTCGCTGGAAATAGT-AT--C---GTTAACGGCGAAGTC 258
||||| | ||| ||||||||||| ||||||||| || | |||| ||||||
Sbjct 238 ACGGTGCGAGTCGTTTGGGACGTCGCCGGAAATAGTAATGGCGTTGTTAGTGGCGAAAAG 297
Query 259 AAAAGGCACAAGGTTATGGGATTCGTCGGAATCCAGACCGGATTCAGATCTGCTGGCCGG 318
|| ||||| ||||||||||||||||| || || || |||||||| ||||||||||||||
Sbjct 298 AAGAGGCATAAGGTTATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGG 357
Query 319 AGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAAGGCCTTCGACGATTGGAG 378
|||||| | || || || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 358 AGACGATCACTTAGAAAGACATGGATGCCGTCAGATCCAGAAGGTCTTCGACGTTTGGAA 417
Query 379 GAATCAACAGGATTGGCCATTAGATTTATTATAGGCAAAAC-CAAAGATGAGGCCAAAAT 437
||||| || || || ||||| || ||||| ||||| ||||| |||| ||||| |||||
Sbjct 418 GAATCTACGGGGTTAGCCATCAGGTTTATGATAGGAAAAACGAAAAG-TGAGGAGAAAAT 476
Query 438 GGCTGAGCTTAGAAGGGAAATCGCAGAGTACGATGACTTTATACTGCTAGATCTCGAGGA 497
|||| |||| ||||| |||||||||||||| |||||||| ||||||||||| |||| ||
Sbjct 477 GGCTCAGCTCAGAAGAGAAATCGCAGAGTATGATGACTTCGTACTGCTAGATATCGAAGA 536
Query 498 GGAGTATAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAAAGCTGCATACGC-CTTAT 556
|||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 537 GGAGTACAGTAAGCTTCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCGTACGCGCTT-T 595
Query 557 ATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGGTTGT 616
||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 596 ATGATTCTGAGTTCTATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCT 655
Query 617 CTTTGCTGTTGGCTAAAGAGCGGACTCACTCGCAGACGTACCTCGGATGCCTGAAAAAAG 676
|| |||| ||||| |||||||||| |||||| ||||||||||| |||||| ||||||| |
Sbjct 656 CTCTGCTATTGGCGAAAGAGCGGAGTCACTCTCAGACGTACCTAGGATGCTTGAAAAAGG 715
Query 677 GTCCGGTTTTCACAGATCCAAAGCTCAAATGGTATGAACCTTTGGCAGATCTGCTCGGGA 736
||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||||
Sbjct 716 GTCCGGTTTTCACAGATCCTAAGCTCAAATGGTATGAACCATTGTCTCATCTGCT-GGGA 774
Query 737 AA-GAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTTCTGCTGATGTTGTCA-C 794
|| |||||||||||||||||||||||||| || |||||||| ||||||||||| || | |
Sbjct 775 AAAGAGTACTTTCTTCATGCTTATGGCCCGATTTATGCTCTCTCTGCTGATGTGGT-AGC 833
Query 795 TAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAGCAATGAGGACGTGACTAT 854
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| || ||
Sbjct 834 CAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAACAACGAGGACGTAACAAT 893
Query 855 AGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAATCTTCACACCCTTTGTGAACC 914
|||||||||||||||||||||||| || ||||||||||| | ||||| |||||| |||||
Sbjct 894 AGGTGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACC 953
Query 915 AGAGTGCTCACCATACTCCA-TTGCTGTTTGGGATATACCGAAATGCTCAGGCCTCTGTA 973
||| |||||||| | || | ||||||||||||| || || ||||||||||| || ||||
Sbjct 954 AGAATGCTCACCTT-CTTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTA 1012
Query 974 ACCCAGAGAAAAGGATGTTGGAACTTCACAACCTAGAGAGCTGCTCAAAAACCCCGACTT 1033
||||||||||||||||||||||||||||||| | ||| |||||||| |||| ||| ||||
Sbjct 1013 ACCCAGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCAACTT 1072
Query 1034 TGCCATCAGATGATGAATGAT 1054
|||||||||||||||||||||
Sbjct 1073 TGCCATCAGATGATGAATGAT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5