BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929280
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
AT3G14970.1 | Symbols: | RING/U-box superfamily protein | chr3... 843 0.0
> AT3G14970.1 | Symbols: | RING/U-box superfamily protein | chr3:5039071-5039733
REVERSE LENGTH=663
Length=663
Score = 843 bits (456), Expect = 0.0
Identities = 599/667 (90%), Gaps = 14/667 (2%)
Strand=Plus/Plus
Query 21 ATGGTTTTTGATGCTGTCAATCCAGACCCCGACAGCTTCGTCTACTATGATCCGATCTAC 80
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1 ATGGTTTTTGATGCTGTCAATCCAGACCCCGACAGCTTCGTTTACTATTATCCGATCTAT 60
Query 81 AACGACGAAGGCGATTTTCGCAGAACCCAAAACTTGACGTTCATTTTTCATGTGTGTTAC 140
||||| |||||||||||| |||||||||||||||||| ||||| |||||| | ||||||
Sbjct 61 AACGATGAAGGCGATTTTGGCAGAACCCAAAACTTGATGTTCAAGTTTCATTTATGTTAC 120
Query 141 AATCTTGCCCCTGAAGTAAATTCAGATGGAGAAGAAGAAGATGTTGACAATCTTGAAACT 200
||||||||||||||||||||||||||||||||||| ||| || | | |||||||||||
Sbjct 121 AATCTTGCCCCTGAAGTAAATTCAGATGGAGAAGATGAAAATCCTCTCGATCTTGAAACT 180
Query 201 CTAATCCG-TGATCAAACTCAAGAGTTTGATAAAGAATTACTTTTCAGTGGAGATAGGGA 259
||| | || ||||| |||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 CTACT-CGTTGATCGAACTCACGAGTTTGATAAAGGATTGCTTTTCAGTGGAGATAGGGA 239
Query 260 GCAGATACAAGTCATTGTCTATCAC-TTGCTTGATTTGATTAAAGCCCCTCGTTATAGTG 318
||| |||||||||||||||| |||| || |||||||||||||||||||||||||||| ||
Sbjct 240 GCAAATACAAGTCATTGTCTGTCACATT-CTTGATTTGATTAAAGCCCCTCGTTATATTG 298
Query 319 AGGTTGTTAGAAAACTCATTGATGCAATCTTTGATTTGAAGGAGCGTGATAAGATCTCTA 378
| ||||||| | ||||||||||||| ||| ||||||| ||| || |||||||||||||||
Sbjct 299 ATGTTGTTACAGAACTCATTGATGCGATCCTTGATTTAAAGAAGTGTGATAAGATCTCTA 358
Query 379 ACGTG-ATGAAGGTAGATGTAGTCATAAATGTTATTGTGTGGAGGTTTCCtgatgatgat 437
||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 ACGTGAAAG-AGGTAGATGTAGTCATCAATGTTATTGTGTGGAGGTTTCCTGATGATGAT 417
Query 438 gatgatgatgatgatgTAGATGTGAAACTTGAGGTGGCTCCGGCGAGCAATGAGGCGATA 497
|||||||||| | | | | ||||| ||||| |||||| |||||||||||||| ||| |
Sbjct 418 GATGATGATG-T-A-G-A--TGTGAGACTTGCGGTGGCCCCGGCGAGCAATGAAGCGGTG 471
Query 498 GAGCAGCACTTGGAGACGGTTGTTGTTGAGAACGAAGGATATTGTGTGATATGCATGGAT 557
||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||||||
Sbjct 472 GAGCAACACTTGGAGACGGTTGTTGTTGAGAATGAAAGTTGGTGTGTGATATGCATGGAT 531
Query 558 ACGATCCG-AGTTGGATCGGATATGGCAGCGGGTCGAATGCCGTGTTCTCACGTGTTCCA 616
| |||||| | |||||| |||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 532 AAGATCCGGA-TTGGATTGGATGTGGCTGCGGGTCGAATGCCGTGTTCTCACGTGTTTCA 590
Query 617 TCGCACGTGTGCTGAAGATTGGCTTAGGAGTAGTGGGATTTGTCCGGTGTGTCGTGCCAT 676
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 591 TCGCACGTGTGGTGAAGATTGGCTTAGGTGTAGTGGGATTTGTCCGGTGTGTCGTGCCAT 650
Query 677 GTTTCCG 683
|||||||
Sbjct 651 GTTTCCG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34360156548
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5