BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929286
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription f... 1962 0.0
AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127 FO... 261 1e-68
AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea an... 261 1e-68
> AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription
factor 4 | chr3:5061681-5064115 FORWARD LENGTH=2209
Length=2209
Score = 1962 bits (1062), Expect = 0.0
Identities = 1288/1389 (93%), Gaps = 47/1389 (3%)
Strand=Plus/Plus
Query 29 TACTCTGGATTCCTCACCGTCTTACGACGACCACCGTCGCCGCCGCCGCCGTCTCGACGA 88
|||||||||||||||||| ||| |||||||||||||||||||||||||||| | |
Sbjct 408 TACTCTGGATTCCTCACCCTCTAACGACGACCACCGTCGCCGCCGCCGCCG---C--C-- 460
Query 89 AGACGCTGACCTTCCTCAATATGCTCAACCAATGGCTGACGACCAATACCTTCACCCGCC 148
| | | || | ||||||||| ||||||| |||||||||||| || |||||||||
Sbjct 461 -GTCTC-GA-----C-GAATATGCTCTACCAATGTCTGACGACCAATTCCATCACCCGCC 512
Query 149 GCCTCCTTCTTCAATGAGGCACCGTGCTACGTTGGAGGCGGCGGACGGCGGCTGCGGCGA 208
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 513 GCCTCCTTCTTCAATGAGGCACCGTTCTACGTCGGATGCGGCGGACGGCGGCTGCGGCGA 572
Query 209 GATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGATCGCCACAG 268
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 573 GATTGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGACCGCCACAG 632
Query 269 CAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGCTCACACGGC 328
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 633 CAAAGTCTGCACGGCTAAAGGGCCACGTGACCGGCGCGTGAGACTCTCTGCTCACACGGC 692
Query 329 GATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCAAAGCCGTTGA 388
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 693 GATTCAGTTTTACGATGTTCAAGACAGGCTTGGTTTCGACCGACCTAGCAAAGCCGTTGA 752
Query 389 TTGGCTTATCAAAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTTCCTCCCTGGAA 448
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 753 TTGGCTTATCAAAAAGGCTAAGACTTCCATTGACGAGCTCGCTGAGCTTCCTCCCTGGAA 812
Query 449 TCCCGCCGATGCAATTCGCCTAGCCGCTGCTAACGCTAAACCCAGAAGAACCACCGCCAA 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TCCCGCCGATGCAATTCGCCTAGCCGCTGCTAACGCTAAACCCAGAAGAACCACCGCCAA 872
Query 509 AACCCAAATCTCGCCGTCGCC-CC-C-GCCGCAACAGCAACAACAACAGCAACAGCTTCA 565
|||||||||||| ||||| || || | ||||||||||||||||||||| |||||||||||
Sbjct 873 AACCCAAATCTCTCCGTCTCCGCCACCGCCGCAACAGCAACAACAACAACAACAGCTTCA 932
Query 566 GTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGTAAC---GAGTCCAGTTT 622
|||||||| ||| ||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 933 GTTCGGTGTTGGCTTCAACGGAGGAGGAGCAGAGCATCCGAGTAACAACGAGTCGAGTTT 992
Query 623 TCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGT 1052
Query 683 GGTTGGTTCTTCAACGGAGGCTCCTCCAAATCATCAGCTTATGCATAATTATCACCATCA 742
| |||| |||||||||||||||||| | |||||| | |||||||| || ||||| |||||
Sbjct 1053 GATTGGCTCTTCAACGGAGGCTCCTTCGAATCATAACCTTATGCACAACTATCATCATCA 1112
Query 743 ---TCCGCCGGATTTGCTTTCTCGAACTAATAGCCAAAACCAAGATCTCCGTCTCTCGCT 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GCATCCGCCGGATTTGCTTTCTCGAACTAATAGCCAAAACCAAGATCTCCGTCTCTCGCT 1172
Query 800 GCAATCGTTCCCGGATGGTCCACCGTCGCTTCTCCACCAC-AACCACCATCACCACACCT 858
||||||||||||||||||||||||||||||||| |||||| ||| | || ||||||||||
Sbjct 1173 GCAATCGTTCCCGGATGGTCCACCGTCGCTTCTGCACCACCAAC-ATCACCACCACACCT 1231
Query 859 CTGCTTCCGCCTCCGAGCCTGTTCTCTTCTACGGGCAGAGCAATCCGTTAGGGTTTGACA 918
|||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1232 CTGCTTCCGCCTCCGAGCCTACTCTGTTCTACGGACAGAGCAATCCGTTAGGGTTTGACA 1291
Query 919 CATCGAATTCTGTGAGTTGGGAGCAGCAGTCGTCGGAATTCGGAAGGATTCAGAGACTGG 978
|||||| || | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1292 CATCGA-----GT---T-GGGAGCAGCAGTCGTCGGAATTCGGAAGGATTCAGAGACTAG 1342
Query 979 TGGCTTGGAACAGCGGCGGTGGCGG---AGCAGCCGATACAGGAAACGGAGGAGGGTTTC 1035
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1343 TGGCTTGGAACAGCGGCGGTGGCGGCGGAGCAACCGATACAGGAAACGGAGGAGGGTTTC 1402
Query 1036 TGTTCGCTCCTCCT-C-C-TTCAACGACGTCGTTTCAGCCAGTTCTTGGCCAAAGCCAAC 1092
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TGTTCGCTCCTCCTACTCCTTCAACGACGTCGTTTCAGCCAGTTCTTGGCCAAAGCCAAC 1462
Query 1093 AGCTTTATTCTCAGAGGGGTCCCCTTCAGTCCAGTTACAGTCCCATGATCCGTGCTTGGT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 AGCTTTATTCTCAGAGGGGTCCCCTTCAGTCCAGTTACAGTCCCATGATCCGTGCTTGGT 1522
Query 1153 TTGatcctcaccaccatcatcaatccatctccaccgacgatatcaaccaccaccaccacc 1212
||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1523 TTGATCCTCACCATCATCACCAATCCATCTCCACCGACGATCTCAACCACCACCA----- 1577
Query 1213 atcaccTTCCTCCGCCGGTTCACCAATCAGCAATCCCCGGAATTGGATTCGCCTCAGGTG 1272
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1578 -TCACCTTCCTCCACCGGTTCACCAATCAGCAATCCCCGGAATCGGATTCGCCTCAGGTG 1636
Query 1273 AATTCTCTTCCGGTTTTCGCATACCAGCACGGTTTCAGGGCCAAGAAGAGGAACAGCACG 1332
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1637 AATTCTCTTCGGGTTTTCGCATACCAGCACGGTTTCAGGGCCAAGAAGAGGAGCAGCACG 1696
Query 1333 ACGGTCTCACCCACAAGCCGTCCTCTGCTTCCTCTATTTCTCGCCATTGACAATCGAAAC 1392
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 ACGGTCTCACTCACAAGCCGTCCTCTGCTTCCTCTATTTCTCGCCATTGACAATCGAAAC 1756
Query 1393 TAATCCTCT 1401
|||||||||
Sbjct 1757 TAATCCTCT 1765
> AT1G53233.1 | Symbols: | other RNA | chr1:19850031-19852127
FORWARD LENGTH=1938
Length=1938
Score = 261 bits (141), Expect = 1e-68
Identities = 385/494 (78%), Gaps = 51/494 (10%)
Strand=Plus/Minus
Query 201 TGCGGCGAGATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGAT 260
||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 1153 TGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGA- 1095
Query 261 C-GCCACAGCAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGC 319
| | || || ||||| || || || |||||||||||||||||||||||||| ||||| ||
Sbjct 1094 CAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGTGAGACTCTCAGC 1035
Query 320 TCAC-ACGGCGATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCA 378
|| | ||||||||||| ||||||||||||||||| || |||||||| || || || || |
Sbjct 1034 TC-CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTA 976
Query 379 AAGCCGTTGATTGGCTTATCA-AAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTT 437
|||| |||||||||||||| | ||| ||||| || ||||||| || || ||| |||||
Sbjct 975 AAGCTGTTGATTGGCTTATTACTAAA-GCTAAATCCGCCATTGATGATCTTGCTCAGCTT 917
Query 438 CCTCCCTGGAATCCCGCCG--A----T-G-CAATTCGCC-TAGCCGCTGCTAACGCTAAA 488
||||| ||||| ||||||| | | | ||| |||| || |||||||||||||||
Sbjct 916 CCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAA 857
Query 489 CCCAGAAGAACCACCGCCAAAACCCAAATCTCGCCGTCGCCCCCGCCGCAACAGCAACAA 548
||||||| || | ||||||| ||| || | |||| ||||| |||| | || |
Sbjct 856 CCCAGAA-AA--A---CCAAAACTTTAATTTC-TC--CGCCACCGCCACAACCGGAA-GA 807
Query 549 CAACAGCAACAGCTTCAGTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGT 608
||||| || || || | | || ||| || || || | || | || |
Sbjct 806 -AACAG----AG---CA--TC-AT-C--GAATCG---GA-GA--AG-A-AG-A--AGA-T 773
Query 609 AACGAGTCCAGTTTTCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAG 668
||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 772 AACGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAG 713
Query 669 TCGTTTTTTCCGGT 682
||||||||||||||
Sbjct 712 TCGTTTTTTCCGGT 699
> AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea
and PCF transcription factor 3 | chr1:19849788-19851725 REVERSE
LENGTH=1844
Length=1844
Score = 261 bits (141), Expect = 1e-68
Identities = 385/494 (78%), Gaps = 51/494 (10%)
Strand=Plus/Plus
Query 201 TGCGGCGAGATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGAT 260
||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 384 TGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGA- 442
Query 261 C-GCCACAGCAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGC 319
| | || || ||||| || || || |||||||||||||||||||||||||| ||||| ||
Sbjct 443 CAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGTGAGACTCTCAGC 502
Query 320 TCAC-ACGGCGATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCA 378
|| | ||||||||||| ||||||||||||||||| || |||||||| || || || || |
Sbjct 503 TC-CGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTA 561
Query 379 AAGCCGTTGATTGGCTTATCA-AAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTT 437
|||| |||||||||||||| | ||| ||||| || ||||||| || || ||| |||||
Sbjct 562 AAGCTGTTGATTGGCTTATTACTAAA-GCTAAATCCGCCATTGATGATCTTGCTCAGCTT 620
Query 438 CCTCCCTGGAATCCCGCCG--A----T-G-CAATTCGCC-TAGCCGCTGCTAACGCTAAA 488
||||| ||||| ||||||| | | | ||| |||| || |||||||||||||||
Sbjct 621 CCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAA 680
Query 489 CCCAGAAGAACCACCGCCAAAACCCAAATCTCGCCGTCGCCCCCGCCGCAACAGCAACAA 548
||||||| || | ||||||| ||| || | |||| ||||| |||| | || |
Sbjct 681 CCCAGAA-AA--A---CCAAAACTTTAATTTC-TC--CGCCACCGCCACAACCGGAA-GA 730
Query 549 CAACAGCAACAGCTTCAGTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGT 608
||||| || || || | | || ||| || || || | || | || |
Sbjct 731 -AACAG----AG---CA--TC-AT-C--GAATCG---GA-GA--AG-A-AG-A--AGA-T 764
Query 609 AACGAGTCCAGTTTTCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAG 668
||||| || |||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 765 AACGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAG 824
Query 669 TCGTTTTTTCCGGT 682
||||||||||||||
Sbjct 825 TCGTTTTTTCCGGT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5