BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929287
Length=772
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15040.1 | Symbols: | Protein of unknown function, DUF584 |... 1171 0.0
> AT3G15040.1 | Symbols: | Protein of unknown function, DUF584
| chr3:5064704-5066690 REVERSE LENGTH=1667
Length=1667
Score = 1171 bits (634), Expect = 0.0
Identities = 721/762 (95%), Gaps = 9/762 (1%)
Strand=Plus/Plus
Query 9 GTTTCTTTAACAACAATGAACAAAAATCCACGAATCGATTTTTCCTCACCGTCGTCGTTA 68
|||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GTTTTTTTAGCAACAATGAATAAAAATCCACGGCTCGATTTTTCCTCACCGTCGTCGTTA 239
Query 69 GCCACCGTCTCTGACTCTGCAGATGGCGAGCTGAATGAAGACGACATCTTTGCAATCGAC 128
||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 240 GCCACTATCTCCGACTCTGCAGACGGTGAGCTGAATGAAGACGACATCTTTGCAATCGAC 299
Query 129 ATATCTCATGCGCCG-CT-----TCGTCATTCTCCGGTATCATCTCCGGCGAAGCAACAA 182
|||||||| |||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 300 ATATCTCACGCGCCGCCTCAAGCTCGTCATTCTCCTGTATCATCTCCGGCGAAGCAACAA 359
Query 183 ACTCCTGCTCGCCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAACGTGGAAGCTTCTGGT 242
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 360 ACTCCTGCTCGTCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAATGTGGAAGCGTCTGGT 419
Query 243 ATCCTCGCGGCTCTTCCTGAATCCTCTGGAAATAGTAGTTACTTAAGTCATGTCTTTCAC 302
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 420 ATCCTCGCGGCTCTTCCTGAATCATCTGGGAGTAGTAGTTACTTAAGTCATGTCTTTCAC 479
Query 303 CACAAACCTGCGGCTGCTCTCTCCACTTCTGTCTCCTCTACAGCTTCTTCATCGTCTTCT 362
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 CACAAACCTGCGGCTGCTCTCTCTACTTCTGTCTCCTCCACAGCTTCTTCATCGTCTTCT 539
Query 363 TCGGGTGGTGGTGCATCAGCTGCTTCTTCGTCTTCCGCTCGAGCTATCCCAACCGCGCCT 422
|| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 540 TCAGGTGGTGGTGCATCAGCTGGTTCTTCGTCTTCAGCTCGAGCTATCCCGACCGCGCCT 599
Query 423 AAACCGCCTCAAGAAAGGCTTCCGTTTTCAGCTTCTTTTATAGGTGGTGGGAAGTATCCT 482
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 AAACCGCCTCAAGAGAGGCTTCCGTTTTCAGCTTCTTTTGTAGGTGGTGGGAAGTATCCT 659
Query 483 CAGTCAGCTCCGGTTCAAGTGCCGTTAGTATCGTCTGCGATGATGAATCGTCATAAGAAG 542
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 CAATCAGCTCCGGTTCAAGTGCCGTTAGTGTCGTCTGCGATGATGAATCGTCATAAGAAG 719
Query 543 GAATTCAAGCTGACTGATGTGGTGGATGATGATGAGGAGGAAGAAGAGGAAGGCGAAATG 602
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 GAATTCAAGCTGACTGATGTGGTGGATGATGAT---GAGGAAGAAGAGGAAGGCGAAATG 776
Query 603 CTTCCACCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCTTCGTTGCTATCTTGCTCT 662
||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 777 CTTCCGCCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCGTCGTTGTTATCTTGCTCT 836
Query 663 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 896
Query 723 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGTGttttttt 764
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 897 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGTTTTTTTTT 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37524907809
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5