BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg929287 Length=772 Score E Sequences producing significant alignments: (Bits) Value AT3G15040.1 | Symbols: | Protein of unknown function, DUF584 |... 1171 0.0 > AT3G15040.1 | Symbols: | Protein of unknown function, DUF584 | chr3:5064704-5066690 REVERSE LENGTH=1667 Length=1667 Score = 1171 bits (634), Expect = 0.0 Identities = 721/762 (95%), Gaps = 9/762 (1%) Strand=Plus/Plus Query 9 GTTTCTTTAACAACAATGAACAAAAATCCACGAATCGATTTTTCCTCACCGTCGTCGTTA 68 |||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 180 GTTTTTTTAGCAACAATGAATAAAAATCCACGGCTCGATTTTTCCTCACCGTCGTCGTTA 239 Query 69 GCCACCGTCTCTGACTCTGCAGATGGCGAGCTGAATGAAGACGACATCTTTGCAATCGAC 128 ||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 240 GCCACTATCTCCGACTCTGCAGACGGTGAGCTGAATGAAGACGACATCTTTGCAATCGAC 299 Query 129 ATATCTCATGCGCCG-CT-----TCGTCATTCTCCGGTATCATCTCCGGCGAAGCAACAA 182 |||||||| |||||| || |||||||||||| |||||||||||||||||||||||| Sbjct 300 ATATCTCACGCGCCGCCTCAAGCTCGTCATTCTCCTGTATCATCTCCGGCGAAGCAACAA 359 Query 183 ACTCCTGCTCGCCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAACGTGGAAGCTTCTGGT 242 ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 360 ACTCCTGCTCGTCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAATGTGGAAGCGTCTGGT 419 Query 243 ATCCTCGCGGCTCTTCCTGAATCCTCTGGAAATAGTAGTTACTTAAGTCATGTCTTTCAC 302 ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||| Sbjct 420 ATCCTCGCGGCTCTTCCTGAATCATCTGGGAGTAGTAGTTACTTAAGTCATGTCTTTCAC 479 Query 303 CACAAACCTGCGGCTGCTCTCTCCACTTCTGTCTCCTCTACAGCTTCTTCATCGTCTTCT 362 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 480 CACAAACCTGCGGCTGCTCTCTCTACTTCTGTCTCCTCCACAGCTTCTTCATCGTCTTCT 539 Query 363 TCGGGTGGTGGTGCATCAGCTGCTTCTTCGTCTTCCGCTCGAGCTATCCCAACCGCGCCT 422 || ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| Sbjct 540 TCAGGTGGTGGTGCATCAGCTGGTTCTTCGTCTTCAGCTCGAGCTATCCCGACCGCGCCT 599 Query 423 AAACCGCCTCAAGAAAGGCTTCCGTTTTCAGCTTCTTTTATAGGTGGTGGGAAGTATCCT 482 |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 600 AAACCGCCTCAAGAGAGGCTTCCGTTTTCAGCTTCTTTTGTAGGTGGTGGGAAGTATCCT 659 Query 483 CAGTCAGCTCCGGTTCAAGTGCCGTTAGTATCGTCTGCGATGATGAATCGTCATAAGAAG 542 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 660 CAATCAGCTCCGGTTCAAGTGCCGTTAGTGTCGTCTGCGATGATGAATCGTCATAAGAAG 719 Query 543 GAATTCAAGCTGACTGATGTGGTGGATGATGATGAGGAGGAAGAAGAGGAAGGCGAAATG 602 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 720 GAATTCAAGCTGACTGATGTGGTGGATGATGAT---GAGGAAGAAGAGGAAGGCGAAATG 776 Query 603 CTTCCACCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCTTCGTTGCTATCTTGCTCT 662 ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 777 CTTCCGCCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCGTCGTTGTTATCTTGCTCT 836 Query 663 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 896 Query 723 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGTGttttttt 764 |||||||||||||||||||||||||||||||||| ||||||| Sbjct 897 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGTTTTTTTTT 938 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37524907809 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5