BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929297

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17695.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   575    1e-163


> AT2G17695.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
chloroplast; CONTAINS InterPro DOMAIN/s: Domain of unknown function 
DUF1990 (InterPro:IPR018960); Has 259 Blast hits to 
259 proteins in 120 species: Archae - 0; Bacteria - 197; Metazoa 
- 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes 
- 5 (source: NCBI BLink). | chr2:7684112-7685176 REVERSE 
LENGTH=887
Length=887

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 349/368 (95%), Gaps = 0/368 (0%)
 Strand=Plus/Plus

Query  4    AATTGCAGGCATTTTGGAATGGATTGGGCATTTGTTGATCCTGCAACTCCTGTTGAAACC  63
            ||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  396  AATTGGAAGCATTTTGGTATGGATTGGGCATTTGTTGATCCTGCAACACCTGTTGAAACC  455

Query  64   GGTAAGAAGTTTTGCATTTGTGTGAAAGAAGTTCTTCCATGGGTGATGCTTCCTCTACAA  123
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  456  GGTAAGAAGTTTTGCATTTGCGTGAAAGAAGTTCTTCCATGGGTGATGCTTCCTCTACAA  515

Query  124  GTGGTTTATGTTGATGAAAGCCGGAAATCAAGAAAAGGCCCTGCGGATTTCGGTTACGGA  183
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  516  GTGGTTTATGTTGACGAAAGCCGGAAATCAAGAAAAGGCCCTGCGCATTTCGGTTACGGA  575

Query  184  AGCGGCACTCTTCAGGGTCATTTACTAGCTGGAGAAGAACGGTTTTCTATAGAGCTTGAT  243
            ||||| ||||||||||| |||||||| ||||||||||||  |||||| ||||||||||||
Sbjct  576  AGCGGTACTCTTCAGGGACATTTACTCGCTGGAGAAGAAAAGTTTTCGATAGAGCTTGAT  635

Query  244  GGAAATGGTGAGGTATGGTATGAGATAACGTCGTTCTCAAAGCCCGCTCATTTCTTGTCG  303
            |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  636  GGAAATGGTGAGGTATGGTATGAGATAACGTCTTTCTCAAAGCCTGCTCATTTCTTGTCG  695

Query  304  TTCCTAGGATATCCTTATGTGAAGCTAAGGCAGAAGCACTTTGCTCGCCATTCTTCTGAA  363
            ||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  696  TTCCTCGGGTATCCTTATGTGAAGCTAAGGCAGAAGCACTTTGCTCGTCATTCTTCTGAA  755

Query  364  GCAGTGCT  371
            || |||||
Sbjct  756  GCTGTGCT  763



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5