BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929301
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15150.1 | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superf... 1247 0.0
> AT3G15150.1 | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superfamily
protein | chr3:5101985-5104140 REVERSE LENGTH=1033
Length=1033
Score = 1247 bits (675), Expect = 0.0
Identities = 758/798 (95%), Gaps = 5/798 (1%)
Strand=Plus/Plus
Query 1 TTGGAGCGAAGGACCGATAAATATGGCGTCGGCGTCCTCGTCTGACGGAGTTGCCGGAAG 60
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 37 TTGGAGCGAAGGAGCGATAGATATGGCGTCGGCGTCCTCGTCTGACGGAGTTGCCGGAAG 96
Query 61 GATTCAGAACGCTTCTTTGGTTCTTGTCTCCGATACCAATTCCACGCTTGCTGATATCCG 120
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 97 GATTCAGAACGCTTCTTTGGTTCTTGTCTCCGATAACAGTTCCACGCTTGCTGATATCCG 156
Query 121 CAAAGCTGTGGCAATGATGAAGAACATTGCTGTTCAATTGGAGAAAGAAAATCAAACTGA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 157 CAAAGCTGTGGCAATGATGAAGAACATTGCAGTTCAATTGGAGAAAGAAAATCAAACGGA 216
Query 181 CAAGGTCAAGGACCTTGAAAATTCTGTGGCTGAGCTATTGGATTTGTATAGTGATTGTAA 240
|||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 217 CAAGGTTAAGGACCTTGAAAATTCTGTGGCTGAGTTATTGGATTTGCATAGTGATTGTAA 276
Query 241 TCACCGTTCGTCAGCAATTCAATCCGTTGCAAAT-GGTTACCAACCCGGGGAACAGTTAA 299
|||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||
Sbjct 277 TCACCGTTCGACAGCAATTCAATCCGTTGCAAATCGGT-ACCAACCCGTGGAACAATTAA 335
Query 300 CGGACTTTCAAAAGTTGCTTGATTTTGAATTCACAAAACTCAAGGCTACACCTTC-T--G 356
|||||||| |||||||||||||| |||||||||||| ||||||||||||||||| | |
Sbjct 336 CGGACTTTAAAAAGTTGCTTGATGATGAATTCACAAAGCTCAAGGCTACACCTTCCTCAG 395
Query 357 TGCCGCAAAATGATCATTTGATGCGTCAGTTCAGGGAAGCAGTTTGGAACGTTCATCATG 416
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 396 TGCCACAAAATGATCATTTGATGCGCCAGTTCAGGGAAGCAGTTTGGAATGTTCATCATG 455
Query 417 CAGGTGAACCAATGCCTGGTGACGATGAAGAGGACATTGTCATGACCAGTACTCAGTGCC 476
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 456 CAGGTGAACCAATGCCTGGTGACGATGATGAGGACATTGTTATGACCAGTACTCAGTGCC 515
Query 477 CTCTGCTAAACATGACGTGTCCCTTGAGCGGGAAGCCTGTCACTGAACTAGCAGATCCAG 536
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 516 CTCTTCTAAACATGACATGTCCCTTGAGCGGGAAGCCTGTCACTGAATTAGCAGATCCAG 575
Query 537 TTCGCAGTATGGATTGCAGGCACGTCTATGAAAAAGCTGTAATCCTGCATTACATAGTCA 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 576 TTCGCAGTATGGATTGCAGGCACGTCTATGAAAAATCTGTAATCCTGCATTACATAGTCA 635
Query 597 ACAATCCAAACGGGAATTGTCCTGTAGCAGGATGCCGAGGTAAACTGCAGAACAGCAAAG 656
|||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 636 ACAATCCAAATGCGAATTGTCCTGTAGCAGGGTGCCGAGGTAAACTGCAGAATAGCAAAG 695
Query 657 TGATTTGTGATGCAATGTTGAAGTTTGAAATCGAGGAGATGCGCTCGTTGAACAAACAAT 716
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 696 TGATTTGTGATGCAATGTTGAAGTTTGAAATAGAGGAGATGCGCTCGTTGAACAAACAAT 755
Query 717 CTAATAGGGCTGAAGTGATTGAAGACTTCACAGAAGATGTCGATGAAGATTAGAGATCAA 776
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 756 CTAATAGGGCTGAAGTGATTGAAGACTTCACAGAAGATGTGGATGAAGATTAGAGATCAG 815
Query 777 ACATATCTTAGACGGGGT 794
|||| |||| ||| ||||
Sbjct 816 ACATTTCTTGGACCGGGT 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5