BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929304
Length=478
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12320.1 | Symbols: | ankyrin repeat family protein | chr5:... 195 4e-49
> AT5G12320.1 | Symbols: | ankyrin repeat family protein | chr5:3982684-3984078
FORWARD LENGTH=692
Length=692
Score = 195 bits (105), Expect = 4e-49
Identities = 128/139 (92%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 288 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACTCCAATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACA 471
Query 348 ACTGTTGCACAAATGGAACTTGAAAATACCAGGGTGACACGACTTTTCCAGACATCTCCC 407
|||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |
Sbjct 472 ACTGTTGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTC-AGACAACTTCA 530
Query 408 TC-TCGGCATCGTAAATGT 425
|| || ||||| |||||||
Sbjct 531 TCCTCAGCATCCTAAATGT 549
Score = 169 bits (91), Expect = 3e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 155 TATAACTGTAGTGGAGTATCTTATCAGTGAAGGAGTGGATATTAATGCTCTTAACGATGA 214
||| ||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 246 TATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCTTAACGATGA 305
Query 215 GAACAATGCTCCTCTACATTGGGCATGTTTGAATGGCCATGTCGAG 260
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 306 GAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAG 351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22756068591
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5