BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929306
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20... 898 0.0
> AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20,
putative | chr3:5116141-5117615 FORWARD LENGTH=887
Length=887
Score = 898 bits (486), Expect = 0.0
Identities = 593/641 (93%), Gaps = 22/641 (3%)
Strand=Plus/Plus
Query 1 AGA-GAAGCTTGTAGAAATAGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 59
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 55 AGAGGAAGCTTGTAGAAATCGATGGCGACGATAGTGCAGTGTCTTTCTTCCTGTGCGACC 114
Query 60 CTCGAATCCCAATTCAAAGTCCTTTCTCTTAAGGGAA--------TC-TCATCATCTTCT 110
|||||||||||||||||||||||||| |||||||||| || ||| ||||||||
Sbjct 115 CTCGAATCCCAATTCAAAGTCCTTTCGCTTAAGGGAATCTCTTGTTCGTCACCATCTTCT 174
Query 111 TCCTTCTCCAATCGTCGTGGTGGTGCTTCGGCTACTTTATGCTCTTCCCTTAGCTTCTCT 170
|||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||
Sbjct 175 TCCTTCTCCAATCGTC---GTGGTGCTTCGGCTACCTTATCCTCTTCCCTTAGCTTCTCT 231
Query 171 CAGAGCGTTTCTCAATGCGTCGCCTTCTCCTCCGGGAATTTGTGGGTACAGAAGCCAATG 230
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 232 CAGAGCGTTTCTCAATGCGTCGCCTTCTCAACCGGGAATTTGTGGGTACAGAAGCCAATG 291
Query 231 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCGACGAAGAAAGCTGATTCAGCTGCAAAG 290
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 292 AGGCAATTGATTGTGTGTGAGGCTGCTGCTCCTACCAAGAAAGCTGATTCAGCTGCAAAG 351
Query 291 AGAGCTCGCCAAGCCGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 350
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGAGCTCGCCAAGCTGAGAAGAGGCGTGTTTACAACAAATCTAAGAAATCTGAAGCCCGT 411
Query 351 ACACGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTTAAGAAGAAAACTGATGCGCAA 410
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 412 ACCCGGATGAAGAAGGTCTTGGAAGCACTTGAGGGGCTCAAGAAGAAAACTGATGCGCAA 471
Query 411 CCTGATGAGATTGTGACTGTGGAGAAACTAATAGGAGAGGCTTATTCTGCTATAGACAAA 470
|||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct 472 GCTGATGAGATTGTGACGGTGGAGAAACTGATAGGAGAGGCTTATTCTGCAATTGACAAA 531
Query 471 GCAGTCAAGGTTAAAGCGCTACACAAGAACACTGGTGCACGTAGAAAGTCTCGGTTGGCT 530
||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 532 GCAGTGAAGGTTAAAGCACTACACAAGAACACTGGTGCCCGTAGGAAGTCTCGATTGGCT 591
Query 531 AGGAGGAAAAAAGCCGTTGAGATTCACCACGGTTGGTACGTCCCAGATGCAG-T-----A 584
|||||||||||||||||||| |||||||| ||||||||||||||||| |||| | |
Sbjct 592 AGGAGGAAAAAAGCCGTTGAAATTCACCATGGTTGGTACGTCCCAGACGCAGCTGCTGCA 651
Query 585 GCA---TCAGAAGCTGTGACCATGGCTGCATAAGAACATGG 622
||| |||||||||||| ||||||||||||||||||||||
Sbjct 652 GCACCATCAGAAGCTGTGCCCATGGCTGCATAAGAACATGG 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5