BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929307
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2045 0.0
AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20... 252 9e-66
AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 54.7 3e-06
> AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5117489-5119060 REVERSE LENGTH=1572
Length=1572
Score = 2045 bits (1107), Expect = 0.0
Identities = 1436/1588 (90%), Gaps = 50/1588 (3%)
Strand=Plus/Plus
Query 21 ATGGGAGGGAAAAACAAAATTCAAATCTTG-TT----T-C--A-TGCTCTATGGCGGCGC 71
||||||||||||||||||||| |||||||| || | | | |||||||| |||||||
Sbjct 1 ATGGGAGGGAAAAACAAAATTGAAATCTTGTTTCAGCTACAAAGTGCTCTATCGCGGCGC 60
Query 72 CGGATCTCTTC-TTCCTC-ATCCTT-G--GTGGATCTT-C-GCAGTG-TACCTAATCATA 123
|||||||| || || || || || | || | | || | | | | ||| |||||||
Sbjct 61 CGGATCTCATCATTGGTCGAT-TTTCGCCGT-GTTTTTCCTCCCGAGACACCGAATCATA 118
Query 124 AGAACAACATCACTCTCTCCAGGTTTCACTTGCTGGGTATTAATCAAGCTACACACTTTC 183
||||||| ||||||||||||||||| ||||| || || | |||||||||||
Sbjct 119 AGAACAATATCACTCTCTCCAGGTTCCACTTTCT-GG----------G-TACACACTTTC 166
Query 184 TTCATTCTCTTGCAGCTCCCGACAAATTTCC---TA-A-T----G--G----ATTCAATC 228
|||||||||||| |||||||||||||||||| || | | | | | ||| |
Sbjct 167 TTCATTCTCTTGGAGCTCCCGACAAATTTCCAAATAGATTCAACGACGACAAAGACAAGC 226
Query 229 AATCTGCTGTTGATGTTCATAACATCATAAAGCATCACCGTGGAAGTTCACCTGAAGAGA 288
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 227 AATCTGCTCTTGATGTTCATAACATCATAAAGCATCACCGTGGAAGTTCACCTGAAAAGA 286
Query 289 TTGAGCGGATTCTCGATAAGTGCGGGATACAATTGACCGAAGAGCTGGTTTTTGAAGTGC 348
|| |||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||
Sbjct 287 TTAAGCGGATTCTCGATAAGTGCGGGATAGACTTAACCGAAGAGCTTGTTTTAGAAGTGG 346
Query 349 TTCATCGGAATCGATCTGATTGGAAACCAGCTTATATACTTTCTCGATTGATCGTTAAAC 408
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 347 TTAATCGGAATCGATCTGATTGGAAACCAGCTTATATACTTTCTCAATTGGTCGTTAAAC 406
Query 409 ATTCTGTTTATATATCTAGCTCCTTGGTT-TACAACGAGATTCTCGATGTTCTTGGGAAA 467
| |||||| || |||||||||| | ||| || |||||||||||||||||||||||||||
Sbjct 407 AATCTGTTCATCTATCTAGCTCGAT-GTTGTATAACGAGATTCTCGATGTTCTTGGGAAA 465
Query 468 ATGCGGCGCTTTGAAGAGTTACACCAAGTGTTCGACGAAATGTCTAAGAGAGATGGATTT 527
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATGCGGCGATTTGAAGAGTTTCACCAAGTGTTCGACGAAATGTCTAAGAGAGATGGATTT 525
Query 528 GTTGACGAGAAGACGTATGAAGTTTTGTTAAACCGATACGCTGCTGCACACAAAGTTGAT 587
||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 526 GTTAACGAGAAGACGTACGAAGTTTTGTTAAACCGTTACGCTGCTGCACATAAAGTTGAT 585
Query 588 GAAGCAGTAGGAGTGTTTGAGAGGAGGAGAGAGTTTGGGATAGAGGATGATTTGGTTGCA 647
||||| |||||||| ||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct 586 GAAGCTGTAGGAGTCTTTGAGAGGAGGAAAGAGTTTGGGATAGATGATGATCTGGTTGCG 645
Query 648 TTTCATGGGCTTTTGATGTGGTTGTGTAGGTATAAGCATGTCGAATTTGCGGAAACTTTG 707
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 646 TTTCATGGGCTTTTGATGTGGTTGTGTAGGTATAAGCATGTTGAATTTGCGGAAACTTTG 705
Query 708 TTCTGCTCTCGTAGAAGAGAGTTTGGCTGCGATATTCGAA-CGAGGAACATTATTCTCAA 766
|| ||||||||||||||||||||||| ||||||| | || ||| ||| || ||||||||
Sbjct 706 TTTTGCTCTCGTAGAAGAGAGTTTGGTTGCGATA-TAAAAGCGATGAATATGATTCTCAA 764
Query 767 CGGTTGGTGTGTTTTGGGAAATGTTCATGAAGCAAAGAGGATTTGGAAAGATATAATTGC 826
||| |||||||| || ||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 765 CGGGTGGTGTGTATTAGGAAATGTTCATGAAGCTAAGAGGTTTTGGAAAGATATCATTGC 824
Query 827 TTCTAAATGCAAGCCAGATGTTGTCAGCTACGGGACAATGATAAATGCATTGACGAAGAA 886
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 825 TTCTAAATGCAGGCCAGATGTTGTTAGCTATGGGACAATGATAAATGCATTGACGAAGAA 884
Query 887 GGGGAAATTGGGAAAGGCTATGGAATTATACAGAGCATTGTGGGAAACCGGAAGAAATCC 946
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||
Sbjct 885 GGGGAAATTGGGAAAGGCTATGGAATTATACAGAGCAATGTGGGACACCAGAAGAAACCC 944
Query 947 GGATGTTAAAATCTGCAATAACGTTATTGATGCATTGTGTTTTAAGAAGAGAATCCCAGA 1006
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 945 GGATGTTAAAATCTGCAATAACGTTATTGATGCTTTGTGTTTCAAGAAGAGAATCCCTGA 1004
Query 1007 GGCTCTTGAAGAATTCAAGGAGATGAGTGAGAAAGGTCCCTCCCCGAATGTTGTGACGTA 1066
||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1005 GGCTCTTGAAGTATTCAGGGAGATTAGTGAGAAAGGTCCCGACCCGAATGTTGTGACGTA 1064
Query 1067 CAACTCGCTTTTAAAGCATCTTTGCAAGATAAGGAGAACTGAGAAAGTTTGGGAGCTGGT 1126
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1065 TAACTCACTTTTGAAGCATCTCTGCAAGATAAGGAGAACTGAGAAAGTTTGGGAGCTAGT 1124
Query 1127 GGAAGAGATGGAACATAAAGGTGGTACTTGTTCGCCTAACGATGTGACATTCGGTTACTT 1186
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1125 GGAAGAGATGGAACTTAAAGGTGGTAGTTGTTCGCCTAACGATGTGACATTCAGTTACTT 1184
Query 1187 GCTTAAGTATTCGCAGAGATCGAAGGATGTTGACGCAGTTCTGGAAAGGATGGCGAAGAA 1246
||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 1185 GCTCAAGTATTCGCAGAGATCGAAGGATGTTGACATAGTTTTGGAAAGGATGGCAAAGAA 1244
Query 1247 CAAGTGTGAAATGACAAGCGACTTGTACAATCTGATGTTTAGGTTATATGTGCAATGGGA 1306
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1245 CAAGTGTGAAATGACAAGCGATTTGTACAATTTGATGTTTAGGTTATATGTGCAATGGGA 1304
Query 1307 CAATGAAGAGAAAGTGAGAGAGATATGGGGTGAGATGGAGAGAATTGGATTAGGACCAGA 1366
||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1305 CAAGGAAGAGAAAGTGAGAGAGATATGGAGTGAGATGGAGAGAAGTGGATTAGGACCAGA 1364
Query 1367 TCAGAGAACATATACTATTAGAATTCATGGTCTGCACACAAAGGGGAAAATTGGAGAAGC 1426
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TCAGAGAACATATACTATTAGGATTCATGGTCTGCACACAAAGGGGAAAATTGGAGAAGC 1424
Query 1427 ATTGAGTTACTTTCAAGAGATGATGTCTAAAGGAATGGTGCCAGAGCCAAGAACTGAGAT 1486
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1425 ATTGAGTTACTTTCAAGAGATGATGTCAAAAGGAATGGTACCAGAGCCAAGAACTGAGAT 1484
Query 1487 GTTACTGAACAAGAACAAGACCAAGCCAAGAGTAGAAGACAAAATGCTTAGATCAAACTT 1546
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1485 GTTACTGAACCAGAACAAGACCAAGCCAAGAGTAGAAGACAAAATGCTTAGATCGAACTT 1544
Query 1547 AACAAGCGAAGAGTCTGAAAGCGACTAA 1574
||||||||||||||||||||||||||||
Sbjct 1545 AACAAGCGAAGAGTCTGAAAGCGACTAA 1572
> AT3G15190.1 | Symbols: | chloroplast 30S ribosomal protein S20,
putative | chr3:5116141-5117615 FORWARD LENGTH=887
Length=887
Score = 252 bits (136), Expect = 9e-66
Identities = 144/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 1448 GATGTCTAAAGGAATGGTGCCAGAGCCAAGAACTGAGATGTTACTGAACAAGAACAAGAC 1507
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 887 GATGTCAAAAGGAATGGTACCAGAGCCAAGAACTGAGATGTTACTGAACCAGAACAAGAC 828
Query 1508 CAAGCCAAGAGTAGAAGACAAAATGCTTAGATCAAACTTAACAAGCGAAGAGTCTGAAAG 1567
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 827 CAAGCCAAGAGTAGAAGACAAAATGCTTAGATCGAACTTAACAAGCGAAGAGTCTGAAAG 768
Query 1568 CGACTAAATGTACATTATAAAGAAACAG 1595
||||||||||||||||||||||||||||
Sbjct 767 CGACTAAATGTACATTATAAAGAAACAG 740
> AT5G08510.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:2753099-2755116 FORWARD LENGTH=1921
Length=1921
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 494 AGTGTTCGACGAAATGTCTAAGAGAGATG 522
|||||||||||||||||||||||||||||
Sbjct 414 AGTGTTCGACGAAATGTCTAAGAGAGATG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78764655105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5