BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929308
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15210.1 | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene... 1018 0.0
> AT3G15210.1 | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene
responsive element binding factor 4 | chr3:5121422-5122562
FORWARD LENGTH=1141
Length=1141
Score = 1018 bits (551), Expect = 0.0
Identities = 662/714 (93%), Gaps = 14/714 (2%)
Strand=Plus/Plus
Query 1 ctctct-ctctttctctcC-AAATATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACT 58
|||||| ||| ||| ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 28 CTCTCTAATCTATCTATCCGAGA-ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACT 86
Query 59 ACTAACCCGACCAACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCT 118
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCT 146
Query 119 TGGGGCCGTTATGCCGCCGAGATCCGAGATCCGGGTAAGAAAACCCGTGTCTGGCTTGGT 178
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 147 TGGGGCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGC 206
Query 179 ACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTATGATACGGCGGCGCGTGATTTTCGT 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 207 ACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGCGGCGCGTGATTTTCGT 266
Query 239 GGAGCTAAGGCTAAGACCAATTTCCCGACTTTTCTCGAGCTGAGTGATCAGAAGGTGCCT 298
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 267 GGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCT 326
Query 299 ACCGGTTTCGCGCGTAGCCCTAGCCAGAGCAGCACGCTTGACTGTGCTTCTCCTCCGACG 358
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 327 ACCGGTTTCGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACG 386
Query 359 GTGGTTGTGCCATCAGCGACGGCTGGGAATGTTCCGCCGCAGCTCGAGCTTAGCCTCGG- 417
| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 387 TTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGC 446
Query 418 --AGGAGGCG-CG--T-GT-T-ATCAGATCCCGAT-TGCGCGTCCTGTCTACTTTTTGGA 468
|||||||| || | || | ||||||||||||| | ||||||||||||||||||||||
Sbjct 447 GGAGGAGGCGGCGGCTCGTGTTATCAGATCCCGATGT-CGCGTCCTGTCTACTTTTTGGA 505
Query 469 CCTGATGGGAATCGGAAACGTAGGTCGTGGTCAGCCTCCTCCTGTGACGTCGGCGTTTAG 528
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 506 CCTGATGGGGATCGGTAACGTAGGTCGTGGTCAGCCTCCTCCTGTGACATCGGCGTTTAG 565
Query 529 ATCGTCGGTGGTGCATGTTCCGACGAAGATGGCTTGTGGGGCCCAGAGCGACTCTGATTC 588
|||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 566 ATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTC 625
Query 589 GTCTTCCGTCGTTGATTTCGAAGGTGGAATGGAGAAGAGATCTCAGCCGTTCGATCTAGA 648
||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 626 GTCATCGGTCGTTGATTTCGAAGGTGGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGA 685
Query 649 TCTAAACTTGCCTCCCCCGTCGGAACAAGCCTGAGCTTCTAACGGTGTCGTTTC 702
||| || |||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct 686 TCTTAATTTGCCTCCTCCATCGGAACAGGCCTGAGCTTTTAACGGTGTCGTTTC 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5