BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929316
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15290.1 | Symbols: | 3-hydroxyacyl-CoA dehydrogenase famil... 1461 0.0
> AT3G15290.1 | Symbols: | 3-hydroxyacyl-CoA dehydrogenase family
protein | chr3:5144997-5146856 FORWARD LENGTH=1185
Length=1185
Score = 1461 bits (791), Expect = 0.0
Identities = 876/918 (95%), Gaps = 1/918 (0%)
Strand=Plus/Plus
Query 5 AGAAGCAGATAGAAAAATGGCGGAGATGAAGTGTGTCGGAGTAGTTGGTGCTGGACAGAT 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 42 AGAAGCAGATAGAAAAATGGCGGAGATGAAGAGTGTCGGAGTAGTTGGTGCTGGACAAAT 101
Query 65 GGGTTCAGGAATCGCACAACTCGCCGCCACGAGTGGCCTCGATGTTTGGCTCATGGACGC 124
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 102 GGGTTCAGGAATCGCGCAACTCGCCGCCACGAGTGGCCTCGACGTTTGGCTCATGGACGC 161
Query 125 TGATCGAGATGCGCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGTTTCGT 184
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 162 TGATCGAGATGCCCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGATTCGT 221
Query 185 CTCCAAAGGTCTAATCTCCAAGGAAATTGGTGATGATTCTATGCATCGTCTACGTTTAAC 244
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 222 CTCCAAAGGTCTAATCTCCAAGGAAGTTGGTGATGATGCTATGCATCGTCTACGATTAAC 281
Query 245 ATCGAATCTTGAAGATTTGTGTTCCGCTGATATCATTGTTGAAGCCATTGTGGAATCAGA 304
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 282 ATCGAATCTTGAAGATTTGTGTTCTGCTGATATCATCGTTGAAGCCATTGTGGAATCAGA 341
Query 305 AGACATTAAGAAGAAACTGTTCAAGGATTTAGATGGTATAGCCAAGAGTTGTGCGATTTT 364
||||||||||||||| ||||| |||||| ||||||||||||| ||||||| |||||||||
Sbjct 342 AGACATTAAGAAGAAGCTGTTTAAGGATCTAGATGGTATAGCTAAGAGTTCTGCGATTTT 401
Query 365 AGCTTCTAACACAAGTTCTATCTCCATTACTCGTCTTGCATCTGCAACGAAAAGACCAAG 424
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||
Sbjct 402 AGCTTCTAACACAAGTTCTATATCCATTACTCGTCTTGCATCTGCTACGAGAAGACCCAG 461
Query 425 CCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAGATCAT 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 462 CCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAAATCAT 521
Query 485 TCGTGGTGCAGATACCTCAGAAGAGACGTTTATTGCTACAAAAGCTCTGGCTGAAAGGTT 544
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 522 TCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGAAAGGTT 581
Query 545 TGGCAAGACAACAGTCTGTTCACAAGACTATGCGGGCTTCGTTGTGAACCGGATCCTCAT 604
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 582 TGGCAAGACAACAGTCTGCTCACAAGACTATGCGGGATTCGTAGTGAACCGAATCCTCAT 641
Query 605 GCCTATGATCAATGAAGCCTTCCACACACTTTACACAGGGGTAGCTACAAAGGAAGACAT 664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GCCTATGATCAATGAAGCGTTCCACACACTTTACACAGGGGTAGCTACAAAGGAAGACAT 701
Query 665 AGACAGCGGAATGAAACACGGCACAAACCACCCGATGGGTCCTCTGGAGTTGGCGGACTT 724
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 702 TGACAGCGGAATGAAACACGGCACAAACCACCCGATGGGTCCTTTGGAGTTGGCGGACTT 761
Query 725 AATTGGTCTAGACGTGTGCTTGTCCGTAATGAAAGTGCTGCATGAGGGACTTGGGGACTC 784
||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 762 AATCGGTCTAGACGTGTGCTTGTCCGTAATGAAAGTGTTGCACGAGGGACTTGGGGACTC 821
Query 785 AAAGTACGCACCTTGCCCTCTTCTTGTTCGATACGTTGATGCTGGAAGATTAGGAAGAAA 844
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 822 AAAGTACGCACCTTGCCCTCTTCTTGTTCAATACGTTGATGCTGGGAGATTAGGAAGAAA 881
Query 845 ACGAGGAGTAGGAGTTTATGATTACCGTAAAGCTACACAGAAGCCATCTCCTCGGCTCTG 904
|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 882 ACGAGGAGTAGGAGTTTATGATTACCGTGAAGCTACACAGAAGCTGTCTCCGCGGCTCTG 941
Query 905 AGAA-GCGAATACCAAAG 921
|||| || ||||||||||
Sbjct 942 AGAAAGCAAATACCAAAG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45210732300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5