BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929326
Length=2612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-517... 4242 0.0
AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19... 521 1e-146
> AT3G15354.1 | Symbols: SPA3 | SPA1-related 3 | chr3:5169095-5172837
REVERSE LENGTH=3103
Length=3103
Score = 4242 bits (2297), Expect = 0.0
Identities = 2512/2617 (96%), Gaps = 10/2617 (0%)
Strand=Plus/Plus
Query 1 TAGCTTTTGGTGGATGTTAAATGGAAGGTTCTTCAAATTCTAACTCTAGGGGATTCAATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TAGCTTTTGGTGGATGTTAAATGGAAGGTTCTTCAAATTCTAACTCTAGGGGATTCAATA 397
Query 61 CCTCTGGTGTTTCAGACAGGAACACTGAGTTCTTACCTGTTGAGAGAATCAC-AGCTCGT 119
|||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||
Sbjct 398 CCTCTGGTGTTTCAGATAGGAACACTGAGTTCTTACCTGTTGAGAGACTCACTA-CTCGT 456
Query 120 TCGAAGCCTTCCTCTCATGTTGATGAGTATGTCAGAAGCTTGTTTGGTAGTACTAGTACA 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 457 TCCAAGCCTTCCTCTCATGTTGATGAGTATGTCAGAAGCTTGTTTGGTAGTACTAGCACA 516
Query 180 CACAAGTCCGGTGAAGATGATTCTTTAGGGATTGATCCTTTTGTTAGGTCCTTGGAATGG 239
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 517 CACAAGTCTGGTGAAGATGATTCTTTAGGGATTGATCCTTTTGTTAGATCCTTGGAATGG 576
Query 240 GGTGATGTTAGTTTGAGACAGTGGCTGGATAAACCTGAACGATCTGTAGATGTTTTCGAG 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 577 GGTGATGTTAGTTTGAGACAGTGGCTGGATAAACCTGAACGATCTGTTGATGTTTTCGAG 636
Query 300 TGCTTGCACGTTTTCAGACAAATCGTTGAGATTGTGAATGCTGCTCACTCTCAAGGCATT 359
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 637 TGCTTGCACGTTTTCAGACAAATTGTTGAGATTGTGAATGCGGCTCACTCTCAAGGCATT 696
Query 360 GTTATTCATAATGTCAGGCCTTCTTGTTTTGTCATGTCTTCGTTTAACCATGTTTCGTTC 419
||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 697 GTTGTTCATAATGTCAGGCCATCATGTTTTGTCATGTCTTCGTTTAACCATGTTTCGTTC 756
Query 420 ATTGAATCCGCTTCTTGTTCGGACTCTGGCTCTGATTCCTTGGAGGATGGTCCAATTAGC 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 ATTGAATCTGCTTCTTGTTCGGACTCTGGCTCTGATTCCTTGGAGGATGGTCCAATTAGC 816
Query 480 CAGAAGGAAATTGGTAGCTCGAGAAGAGAGGAAACTGTATCGAAAGCTGTTGCGATAGAA 539
||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 817 CAGAAGGAAATCGGTAGCTCGAGAAGAGAGGAAGCTGTATCGAAAGCTATTGCAATAGAA 876
Query 540 GAGAAAGGAGTCTACAATAAGTTTTTGGAGAGACGAATTGAGAAACTAGAGGAAGAAAAG 599
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 877 GAGAAAGGAGTCTACAATAAGTTGTTGGAGAGAAAAATCGAGAAACTAGAGGAAGAAAA- 935
Query 600 AA-TCAACCTTTTCCGATGAAACATATATTAGCAATGGAGACAAGTTGGTATACAAGCCC 658
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 936 AACCCAACCTTTTCCGATGAAACATATATTAGCAATGGAGACAAGTTGGTACACAAGCCC 995
Query 659 TGAAGAGGATGTTGATTCTTCAAGTACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCT 718
|||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 996 TGAAGAGGATTTTGGTTCTTCAAGTACTTGTGCTTCAGATGTTTACCGCCTTGGCGTTCT 1055
Query 719 TCTTTTCGAGCTATTTTGCCCTGTACCTTCAAGAGAAGAGAAATCAAGAACTATGTCTAG 778
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1056 TCTTTTCGAGCTATTTTGCCCTGTACCTTCAAGAGAAGAGAAGTCTAGAACTATGTCTAG 1115
Query 779 T-TTAAGACATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTT 837
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TCTT-AGACATCGCGTTCTTCCGCCTCAGATATTGCTCAAATGTCCAAAAGAAGCTTCTT 1174
Query 838 TCTGCTTGTGGTTACTGCATCCTGAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGC 897
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1175 TCTGCTTGTGGTTACTGCATCCTGAGCCAACTTGTCGACCATCAATGAGTGACTTGCTGC 1234
Query 898 AAAGCGAGTTTATAACTGAACCAAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGC 957
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1235 AAAGCGAGTTTATAACTGAACCTAGAGATAATTTGGAAGAACGTGAAGCAGCAATCGAGC 1294
Query 958 TTAGGGACAGAATCGAGGAACAGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGA 1017
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TTCGGGACAGAATCGAGGAACAGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGA 1354
Query 1018 GAAAGCAGGAATCTGCGTATAGATTGC-GTGATACGGTTGCACTTCTTTCTTCTGACATT 1076
| ||||| ||||||||||||||||||| | ||||| ||| ||||||||||||||||||||
Sbjct 1355 GGAAGCAAGAATCTGCGTATAGATTGCAG-GATACTGTTTCACTTCTTTCTTCTGACATT 1413
Query 1077 GAGCAAGTTGTAAAGAGACAATTAATTTTGAAGAAAAAGGGAAGCTCACTCTCTGATTTC 1136
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1414 GAGCAAGTTGTAAAGAGACAGTTAATTTTGAAGAAAAGGGGAAGCTCACTCTCTGATTTC 1473
Query 1137 AGTAAAGATGATCATCAATATCCCTCTGGTCAGCCAATGATAAGCTTCCAGGCAAACGAG 1196
||||||||||||||||||||| |||||||||||||| |||| || |||||||||||||||
Sbjct 1474 AGTAAAGATGATCATCAATATACCTCTGGTCAGCCATTGATGAGTTTCCAGGCAAACGAG 1533
Query 1197 GAGCCATCAGCATTCTTGGCCTCAAGAAAACGATTTAGACAAGGGA-TCTCGGCATTGGA 1255
|||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 1534 GAGCCATCAGCATTCTTGGCCTCAAGAAAACGGGTTAGACAAGGGATTCT-GGCATTGGA 1592
Query 1256 AGACGATGTTGAAGTTGATGAAGAGAGTCAAGGAAGCACACTTCTTGAAAGCTCCCGGTT 1315
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 AAACGGTGTTGAAGTTGATGAAGAGAGTCAAGGAAGCACACTTCTTGAAAGCTCCCGGTT 1652
Query 1316 GATGAGAAACTTCAAGAAACTAGAATCGGTCTACTTTCTGACAAGGCGCAGGCAAATGAA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 GATGAGAAACTTCAAGAAACTAGAATCGGTCTACTTTCTGACAAGGCGCAGGCAAATGAA 1712
Query 1376 GGCTGCTGCTTCAGGGAAATCATTAACTAGACACTCGCCGTTAAGTAGTGAAAATGGAAG 1435
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1713 GGCTGCTGCTTCAGGGAAATCATTAACTAGACATTCGCCGTTAAGTAGTGAAAATGGAAG 1772
Query 1436 AGGTTCAATGATTGTCTCAGAGAAAAGCTCAGTAAGCAACCCCGCCGCACCTAAAGATTT 1495
|||||| |||||||||||||||||||| |||||||||||||| | ||||| |||| |||
Sbjct 1773 AGGTTCTATGATTGTCTCAGAGAAAAGTTCAGTAAGCAACCCGGTGGCACCCAAAGCTTT 1832
Query 1496 CTACAATCATGATTCGAGACAAGGTGGGTGGATAGATCCATTCCTTGAGGGTTTGTGTAG 1555
|| |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1833 CTTCAATAATGACTCGAGACAAGGGGGGTGGATAGATCCTTTCCTTGAGGGTTTGTGCAG 1892
Query 1556 ATATTTATCATTCAGTCAGCTAAGAGTGAAAGCAGATTTGAAACAAGGAGATTTGTTGAA 1615
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1893 ATATTTATCATTCAGTCAGCTAAGAGTGAAAGCTGATTTGAAACAAGGAGATTTGTTGAA 1952
Query 1616 CTCTTCTAACCTCGTTTGCGCCCTTGCTTTTGACCGGGATGGAGAATTATTCGCCACGGC 1675
||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||
Sbjct 1953 CTCTTCTAACCTCGTTTGCGCTCTTGCGTTTGACCGAGAAGGAGAATTATTCGCCACTGC 2012
Query 1676 GGGTGTCAACAAGAAAATCAAGATATTTGAATGTAATTCCATTGTAAACAATAACCGGGA 1735
||| ||||||||||||||||||||||| |||||||| ||||| |||||| ||||||||||
Sbjct 2013 GGGAGTCAACAAGAAAATCAAGATATTCGAATGTAACTCCATAGTAAACGATAACCGGGA 2072
Query 1736 TATTCACTATCCGGTTGTGGAACTGGCTGGTTGGTCAAAGTTAAGTAGTTTATGTTGGAA 1795
||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 2073 TATTCACTATCCGGTGGTGGAATTGGCTGGTCGGTCAAAGCTAAGTAGTTTATGTTGGAA 2132
Query 1796 CAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTGGTTCAGATATGGGA 1855
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2133 CAGCTACATAAAGAGCCAAATTGCATCAAGTAACTTTGATGGTGTTGTTCAGATATGGGA 2192
Query 1856 TGTTGCGAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCAT 1915
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 TGTTGCAAGAAGCCAGTTGGTTACAGAGATGAAGGAGCACAAGAAGCGAGTATGGTCCAT 2252
Query 1916 CGATATATCATCAGCAGACCCGACTTTGCTGGCTAGCGGAAGCGATGATGGAACCGGAGT 1975
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 CGATATTTCATCAGCAGACCCGACTTTGCTGGCTAGCGGAAGCGATGATGGAACCGGAGT 2312
Query 1976 TAGCATTGGGACCATTAAGACAAAGGCCAATGTATGCTGTGTCCAGTTTCCATCAGACTC 2035
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2313 TAGCATTGGGACCATCAAGACAAAGGCCAATGTATGCTGTGTCCAGTTTCCATCAGACTC 2372
Query 2036 AGGACGGTCTCTAGCATTTGGTTCTGCAGATCATAAAGTGTATTACTACGATCTCCGAAA 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2373 CGGACGGTCTCTAGCATTTGGTTCTGCAGATCATAAAGTGTATTACTACGATCTTCGAAA 2432
Query 2096 CCCCAAGATTCCTCTTTGCACAATGATTGGTCATAGCAAGACAGTGAGTTATGTCAAGTT 2155
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2433 CCCCAAGATTCCTCTGTGCACAATGATTGGTCATAGCAAGACAGTGAGTTATGTCAAGTT 2492
Query 2156 TGTAGATTCATCCACTCTTGTGTCCTCTTCTACTGATAACACACTGAAGCTTTGGGACTT 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2493 TGTAGATTCATCCACTCTTGTGTCCTCTTCTACTGATAACACACTGAAGCTTTGGGACTT 2552
Query 2216 GTCGATGTCTGCTTCTGGGATTAATGAAACCCCTCTTCACTCATTCACTGGGCACACTAA 2275
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 2553 GTCGATGTCTGCTTCTGGGATTAATGAATCCCCTCTTCACTCATTCACTGGACACACTAA 2612
Query 2276 TTTAAAGAACTTTGTTGGCCTATCGGTCTCTGATGGGTATATAGCAACAGGCTCAGAGAC 2335
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2613 TTTAAAGAACTTTGTTGGCTTATCGGTCTCTGATGGGTATATAGCAACAGGCTCAGAGAC 2672
Query 2336 TAACGAGGTTTTCGTGTACCACAAGGCTTTCCCAATGCCAGTGATGTCGTACATGTTCAA 2395
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2673 TAACGAGGTTTTCGTGTACCACAAGGCATTCCCAATGCCAGTGATGTCGTACATGTTCAA 2732
Query 2396 CAACACTGACTCTGTGTCTGGTCTCGAAGTGGACGATGCCTCACAGTTCATATCTTCGAT 2455
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2733 CAACACTGACTCTATGTCTGGTCTCGAAGTGGACGATGCATCACAGTTCATATCTTCAAT 2792
Query 2456 CTGCTGGCGAGGACAGTCGTCTACGTTAGTCGCTGCTAACTCCAATGGCAACATCAAAAT 2515
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2793 CTGCTGGCGAGGACAGTCGTCTACGTTAGTCGCTGCTAACTCCAATGGCAACATAAAAAT 2852
Query 2516 TCTGGAGATGATGGCTTGAGCCTCTCACAAATCTCTTGTTCTTCTTCTCCGCAAGAGATC 2575
||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2853 TCTGGAGATGATGACTTGAGCCTCTCATAGATCTCTTGTTCTTCTTCTCCGCAAGAGATA 2912
Query 2576 TGCTCTGCTGGAGTGATTGATATAGGGTAAACCATTT 2612
|||||||||||||||||||||||||||||||||||||
Sbjct 2913 TGCTCTGCTGGAGTGATTGATATAGGGTAAACCATTT 2949
> AT1G53090.1 | Symbols: SPA4 | SPA1-related 4 | chr1:19783542-19786902
FORWARD LENGTH=2690
Length=2690
Score = 521 bits (282), Expect = 1e-146
Identities = 476/566 (84%), Gaps = 27/566 (5%)
Strand=Plus/Plus
Query 567 GAGAGACGAATTG-AGA-AACTAGAGGAAGAAAAGAATCAACCTTTTCCGATGAAACATA 624
|||||||||| | | | ||| |||||||| |||||| |||||||| || |||||||| |
Sbjct 553 GAGAGACGAA--GCAAACAACAAGAGGAAGTAAAGAAGCAACCTTTCCCTATGAAACAGA 610
Query 625 TATTAGCAATGGAGACAAGTTGGTATACAAGCCCTGAAGAGGATGTTGATTCTTC-AAGT 683
||||||||||||||| |||||||||||||| | |||||| ||| || ||| || ||
Sbjct 611 TATTAGCAATGGAGATGAGTTGGTATACAAGTCATGAAGAAGATAATGGTTC-TCTGTGT 669
Query 684 ACTTGTGCTTCAGATGTTTATCGCCTTGGCGTTCTTCT-TTTCGAGCTATTTTGCCCTGT 742
| ||||||||| ||| |||| || ||||| |||||||| ||| |||||||| ||||||||
Sbjct 670 AATTGTGCTTCTGATATTTACCGTCTTGGTGTTCTTCTCTTT-GAGCTATTCTGCCCTGT 728
Query 743 AC-CTTCAAGAGAAGAGAAATCAAGAACTATGTCTAGTTTAAGACATCGCGTTCTTCCGC 801
| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 729 -CTCCTCAAGAGAAGAGAAGTCAAGAACTATGTCTAGTTTAAGACATCGTGTTCTTCCCC 787
Query 802 CTCAGATATTGCTCAAATGTCCAAAAGAAGCTTC-TTTCTGCTTGTGGTTACTGCATCCT 860
|||||||||| ||||| || || ||||||||||| ||| |||||||||||||||||||||
Sbjct 788 CTCAGATATTACTCAATTGGCCTAAAGAAGCTTCCTTT-TGCTTGTGGTTACTGCATCCT 846
Query 861 GAGCCAAGTTGTCGACCATCAATGAGTGACTTGCTGCAAAGCGAGTTTAT-AACTGAACC 919
||||| || ||||||||||| |||||||| ||||| ||||| |||||||| ||| |||||
Sbjct 847 GAGCCTAGCTGTCGACCATCGATGAGTGAGTTGCTACAAAGTGAGTTTATCAAC-GAACC 905
Query 920 AAGAGATAATTTGGAAGAACGTGAAGCTGCAATCAAGCTTA-GGGACAGAATCGAGGAAC 978
||||| |||||||||||||||||||||||||| |||| | |||| |||||||||||||
Sbjct 906 TAGAGAGAATTTGGAAGAACGTGAAGCTGCAATGGAGCT-ACGGGATAGAATCGAGGAAC 964
Query 979 AGGAGTCGTTACTCGAGTTCTTGTTACTGATTCAACAGAG-AAAGCAGGAATCTGC-GTA 1036
| |||| ||||||||||||||||| |||||||||||||| ||| || ||| |||| | |
Sbjct 965 AAGAGTTATTACTCGAGTTCTTGTTTCTGATTCAACAGAGGAAA-CAAGAAGCTGCAG-A 1022
Query 1037 TAGATTGC-GTGATACGGT-TGCACTTCTTTCTTCTGACATTGAGCAAGTTGTAAAGAGA 1094
| ||||| | ||||| | | | ||||| |||||||| || || ||||| |||||| ||
Sbjct 1023 CAAATTGCAG-GATACAATAT-CGCTTCTCTCTTCTGATATCGATCAAGTCGTAAAGCGA 1080
Query 1095 CAATTAATTTTGA-AG-AAAAAGGGA 1118
|| || |||| | || |||||||||
Sbjct 1081 CAGTTGGTTTT-ACAGCAAAAAGGGA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129681547655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5