BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929328

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01890.1 | Symbols:  | Leucine-rich receptor-like protein ki...   555    2e-157


> AT5G01890.1 | Symbols:  | Leucine-rich receptor-like protein 
kinase family protein | chr5:341543-345127 REVERSE LENGTH=3499
Length=3499

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 329/343 (96%), Gaps = 2/343 (1%)
 Strand=Plus/Plus

Query  78   GAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGCCTCCAACT-GGGT  136
            |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct  628  GAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTGCCACCAA-TCGGGT  686

Query  137  CTCGAAGCTCCGACTTGACGCCTTCTCTCTCTCCGGTCACATCGGCCGTGGCCTTCTCCG  196
            |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  687  CTCGGAGCTCCGCCTTGACGCCTTCTCTCTCTCCGGTCACATCGGCCGTGGCCTTCTCCG  746

Query  197  TCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCAGAACCCTAAACCC  256
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  747  TCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCGGAACCCTAAACCC  806

Query  257  CGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGGCGATTTCAGCGGCAATAGTCTCTCGGG  316
            |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct  807  CGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGTGGCAATAATCTCTCGGG  866

Query  317  TCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGTCTCCTTGGCCAA  376
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  867  TCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCGTTTCCTTGGCTAA  926

Query  377  CAACAAACTCACGGGTCCTCTTCCTGTCTCCCTCAGCTACTGT  419
            |||||||||||| ||| || |||||||||||||||||||||||
Sbjct  927  CAACAAACTCACAGGTTCTATTCCTGTCTCCCTCAGCTACTGT  969



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21464328823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5