BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929330
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15358.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 797 0.0
AT1G53035.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 448 3e-125
> AT3G15358.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G53035.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr3:5178013-5178838 FORWARD LENGTH=729
Length=729
Score = 797 bits (431), Expect = 0.0
Identities = 462/476 (97%), Gaps = 5/476 (1%)
Strand=Plus/Plus
Query 1 ATTGGAATCAAC-AAGGTCCGATGAATTCACATCTCTTCCGTGTAATCTGTATGCTCCAT 59
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 75 ATTGGAATCAACAAAGGTCCGATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCAT 134
Query 60 TCGATTATCGCACTTACAAGTGGAACCCTGATGATGTTCTACACAGAGAAAGCTTCGATC 119
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 135 TCGATTATCGCACTCACAAGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATC 194
Query 120 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 254
Query 180 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTACTT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 255 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTT 314
Query 240 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCCGCTGGTTCTGTG 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 315 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCAGCTGGTTCTGTG 374
Query 300 ATTCTCTATATGCTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATTCTCTATATGGTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 434
Query 360 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGACATTGCTTTAGCTGTCTCATGGGTTTTC 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 435 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTC 494
Query 420 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGATTGATGTTTTGttttttttt 475
||||||||||||||||||||||||||||||||||||| | | |||| |||||||||
Sbjct 495 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGAT-G-T-TTTT-TTTTTTTTT 546
> AT1G53035.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G15358.1);
Has 49 Blast hits to 49 proteins in 9 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761700-19762551
REVERSE LENGTH=852
Length=852
Score = 448 bits (242), Expect = 3e-125
Identities = 394/466 (85%), Gaps = 15/466 (3%)
Strand=Plus/Plus
Query 19 CGATGAATTCACATC--TCTTCCGTGTAATCTGTATGCTCCATTCGATTATCGCACTTAC 76
||||||| || |||| | || || ||||||||||| ||||||||||| || || |||||
Sbjct 250 CGATGAA-TC-CATCTTTGTTTCGAGTAATCTGTATACTCCATTCGATAATTGCGCTTAC 307
Query 77 AAGTGGAACCCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGA-CATGGTAGTG 135
||||||||| | |||||||||||||||||||||||||| ||||||||| || || ||||
Sbjct 308 TAGTGGAACCTTAATGATGTTCTACACAGAGAAAGCTTCAATCTTTGGACCA-GGAAGTG 366
Query 136 ATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGC-AGCTTATTCAGATTTCT 194
| || || | ||| || |||||||||||||| ||||| || | | || || |||||||||
Sbjct 367 AGATTGCTAGCAAACTAAAAGGATCAACACCACACGATGAACTA-CTCATACAGATTTCT 425
Query 195 CAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTACTTTTCATGGTGTCGTTT 254
||||||||||||||||||||||| ||||| || || |||||||| |||||||| ||||||
Sbjct 426 CAGTCATTCTCTGGTTTGCTTCTGTTTGCAATTGGTTTGGTACTGTTCATGGTTTCGTTT 485
Query 255 GTGAAAGACAGAGAGTTTCATAGCTTCTTTGCCGCTGGTTCTGTGATTCTCTATATGCTT 314
|||||||||| |||||||||||||||||| || | ||| || |||||||| ||| || ||
Sbjct 486 GTGAAAGACAAAGAGTTTCATAGCTTCTTCGCTGGTGGGTCCGTGATTCTGTATGTG-TT 544
Query 315 A-TGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCC 373
| ||||| | ||||| ||| |||| |||||||| |||||||||||||||| |||||| ||
Sbjct 545 AATGGCTATGTGGAGGGTTTTGTTCGAGTGGAAAATTGAAGATCTTGCTTATGAATGGCC 604
Query 374 CAAGCAAGCCCTTGGAGACATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATAC 433
|| ||||| ||||||||||||||||| ||| | || ||||||||||| || |||||| |
Sbjct 605 TAAACAAGCTCTTGGAGACATTGCTTTGGCTATTTCTTGGGTTTTCTTTCTTGTTTATTC 664
Query 434 ATGGAGAGAGAAGTATGATTGATTGATGTTTTGttttt-t-ttttC 477
|||||||||||||||||||||| | | ||||| |||| | |||||
Sbjct 665 TTGGAGAGAGAAGTATGATTGAT-G-T-TTTTGATTTTCTCTTTTC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22705834444
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5