BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929337
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15360.1 | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type... 898 0.0
> AT3G15360.1 | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type
4 | chr3:5188374-5189697 FORWARD LENGTH=896
Length=896
Score = 898 bits (486), Expect = 0.0
Identities = 584/630 (93%), Gaps = 11/630 (2%)
Strand=Plus/Plus
Query 1 AAAAGAATTTCTCTGCTC--CTTCAATGGCGTCGTTGCTCGATTCCGTCACCGTGACCCG 58
|||| ||| ||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 50 AAAAAAATATCTCTGCTCTGCTCCAATGGCGTCGTTACTCGATTCCGTCACCGTGACCCG 109
Query 59 CGTGTTTTCTCTCCCGATTGCGGCTTCGATTTCATCTACTTCAGCTGGTCCGTCGGTTTC 118
|||||||||||| ||||||||||||||| | || ||| ||||||||| ||||||||||||
Sbjct 110 CGTGTTTTCTCTGCCGATTGCGGCTTCGGTCTCGTCTTCTTCAGCTGCTCCGTCGGTTTC 169
Query 119 AGGACGCCGGATTTC-CCCAGTCAGGTTTCTGGAATTCAGAGGTTTGAAATGTTCGCGGA 177
| ||||||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||
Sbjct 170 ACGACGCCGGATTTCTCCC-GCCAGGTTTCTGGAATTCAGAGGTTTGAAGTCTTCGCGGA 228
Query 178 GTTTGGTGACTCAGTCAGCGAGTGTTGGTGCGAATCGTAGATCCAG-AGCTGCTCGCGGT 236
|||||||||||||||| || ||| | ||||||||||||||| |||| | | |||||||||
Sbjct 229 GTTTGGTGACTCAGTCGGCCAGTCTGGGTGCGAATCGTAGAACCAGAATC-GCTCGCGGT 287
Query 237 GGAAGAATCGCCTGTGAGGCTCAGGACACCACT---GCTGCCGTCGAAGTACCAAACCTG 293
||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 288 GGACGAATCGCCTGTGAGGCTCAGGACACCACTGCCGCCGCCGTCGAAGTACCAAATCTG 347
Query 294 TCTGATTCAGAATGGCAAACACAGGTTCTGGAATCAGATGTCCCAGTAT-TGGTCGAGTT 352
||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct 348 TCTGATTCAGAATGGCAAACAAAGGTTCTGGAATCAGATGTCCCAGT-TCTGGTCGAGTT 406
Query 353 CTGGGCACCATGGTGTGGACCATGCCGTATGATTCACCCCATAGTTGACCAACTGGCCAA 412
||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 407 CTGGGCACCATGGTGTGGACCTTGCCGTATGATTCACCCCATAGTTGACCAGCTAGCCAA 466
Query 413 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACCGACGAGAGCCCAAACACAGC 472
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 467 AGATTTCGCAGGGAAGTTCAAATTCTACAAAATCAACACTGACGAGAGCCCAAATACAGC 526
Query 473 AAACCGTTACGGGATACGCAGCGTTCCAACAGTAATCATCTTCAAAGACGGTGAGAAGAA 532
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 527 AAACCGTTACGGGATACGAAGCGTTCCAACAGTAATCATCTTCAAAGGCGGTGAGAAGAA 586
Query 533 AGATAGTATCATTGGAGCTGTCCCTAGAGAGACATTGGAGAAAACTATAGAAAGATTCTT 592
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 587 AGATAGCATCATTGGAGCTGTGCCTAGAGAGACGTTGGAGAAAACTATAGAAAGATTCTT 646
Query 593 GGTCGAGTAACAAAATTTGACTCGTTTGTC 622
||||||||||||||||||||||| ||||||
Sbjct 647 GGTCGAGTAACAAAATTTGACTCTTTTGTC 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5