BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929348

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15440.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   627    4e-179


> AT3G15440.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: RING/U-box superfamily protein (TAIR:AT3G15740.1); 
Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5211923-5212354 
REVERSE LENGTH=432
Length=432

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 400/429 (93%), Gaps = 5/429 (1%)
 Strand=Plus/Plus

Query  23   ATGGAGTATATTGTGGATGATATATCAGATAGCACATGTATGGTGACACCAATCTACTAT  82
            ||||||| ||||||||||||| |||| ||||| |||||||||||||| |||||||| |||
Sbjct  1    ATGGAGTGTATTGTGGATGATGTATCGGATAGTACATGTATGGTGACGCCAATCTATTAT  60

Query  83   TCGAGAGAAACAACTCAAGATCGTCAAACTTTTTTGTTTGATTTTGAAGTTGTCTACACA  142
            |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   TCGAAAGAAACAACTCAAGATCGTCAGACTTTTTTGTTTGATTTTGAAGTTGTCTACACA  120

Query  143  AAAGTGCCTGAGCCAAATAGTGATGGAGAAGCTGACTACATGTCCAATAAGGTTAAAACA  202
            |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  121  AAAGTGCCTGAGCCAAATAGTGATGGAGAATCTGACTACATGTCCAGTAAGGTTAAAACA  180

Query  203  AGGACTACAAATCAACTTCAAAGATATGGTCGAGACGAGTTCATTGGTCAAGATGTGGAA  262
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct  181  AGGACTACAAATCAACTTCAAAGATATGGTCGAGACGAGTTCATTGGTCAAGATGAAGAA  240

Query  263  CGAATAAAAGCCACAATCTACGAAATTCTCTATGAAATTGGTGTTCCTCCTTATCGAGGG  322
            | ||| |||||||||||||||||||| ||| ||||  ||||||||||||| |||| ||||
Sbjct  241  CAAATCAAAGCCACAATCTACGAAATCCTCAATGATGTTGGTGTTCCTCCGTATCTAGGG  300

Query  323  ATCATGAAAACATTTGCTGAAGAAAT-CGAATGCATATTGAATTCACCTCTGGAGAAATT  381
            |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct  301  ATCATGAAAACATTTGCTGAAGAAATTCAAA-GCATATTGAATTCACCTCTGGAGAAATT  359

Query  382  GGAGAAGATCAAAGTAAAGATCGAAGTTGTTGCACACACGTTTCCTGAAGATGA--A-AT  438
            ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||  | ||
Sbjct  360  GGAGAAGATAAAAGTAAAGATTGAAGTTGTTGCACACATGTTTCCTGAAGATGATGAGAT  419

Query  439  CGATGTTGA  447
            |||||||||
Sbjct  420  CGATGTTGA  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5