BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929350
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15460.1 | Symbols: | Ribosomal RNA processing Brix domain ... 1639 0.0
AT1G52930.1 | Symbols: | Ribosomal RNA processing Brix domain ... 922 0.0
> AT3G15460.1 | Symbols: | Ribosomal RNA processing Brix domain
protein | chr3:5214084-5216261 REVERSE LENGTH=1216
Length=1216
Score = 1639 bits (887), Expect = 0.0
Identities = 964/999 (96%), Gaps = 13/999 (1%)
Strand=Plus/Plus
Query 1 GTTGTTTCTTCTTCAATAGACa-aaaaaaTGGGGAGGAAGAGAAAGCACAGCGAGACTGT 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 46 GTTGTTTCTTCTTCAATAGACACAAAAAATGGGGAGGAAGAGAAAGCACAGCGAGACTGT 105
Query 60 TGCGGCGGCACCGGCGAAGCAGAACGATTCTGCTCCGGAGAGACCTAAAAGGACTCTTTT 119
| |||||||||||| | | || ||||||||||||||||||||| |||||||||||||
Sbjct 106 TACGGCGGCACCGGTG-A--AG---GATTCTGCTCCGGAGAGACCTCAAAGGACTCTTTT 159
Query 120 GGGTTGGAAAGATAAGAACGAAGATGCTGAGGACTCTAAA-C--C-TA--CGTCTGTATT 173
|||||||||||||||||| |||||||||||| |||||||| | | || ||||||||||
Sbjct 160 GGGTTGGAAAGATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATT 219
Query 174 CAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGCATCAGTTTCAGGTATCGGCA 233
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 220 CAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGGTATCGACA 279
Query 234 TTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTGGAAGC 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 280 TTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTAGAAGC 339
Query 294 TAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCTTG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 340 TAAGAGCAGTAGAGGTGCCACTCTTAATGAGCTCATCGAGCTTAAGGGCTCTTCTTCCTG 399
Query 354 TTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTCAAGTCCCCTGG 413
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 400 TTTGTTTTTCGAGTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTGAAGTCCCCTGG 459
Query 414 TGGTCCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCAC 473
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGGACCTTCCGTTAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCAC 519
Query 474 TGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAAAGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 520 TGGAAATCATCTGAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAACGA 579
Query 534 TGCACACTGGAAACTTCTTAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACA 593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TGCACACTGGAAACTTCTGAAAGAGATGTTAACTCAGATTTTTGGAATTCCCGAGGGACA 639
Query 594 TAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATAT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATAT 699
Query 654 TTGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGG 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 ATGGTTCCGTAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGG 759
Query 714 CGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CGATCTGGATAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAA 819
Query 774 GATATTTGGAGGCAGCTTTGGAGGTCCAACGCTTTACGAGAACCCATTCTATGTATCTCC 833
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 820 GATATTTGGAGGCAGCTTTGGAGGTACAACGCTTTACGAGAACCCATTCTATGTATCTCC 879
Query 834 AAACCAGATTCGAGCTTTGGagaaaagaaataaagctgggaaatttgctaagaaaatcaa 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 880 AAACCAGATTCGAGCTTTGGAGAAAAGAAATAAAGCTGGGAAATTTGCTAAGAAAATAAA 939
Query 894 ggcgaaaacaagaagaaaaatGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTAC 953
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 940 GGCAAAAACAAGAAGAAAGATGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTAC 999
Query 954 AGACATGTGGAAGGATGAATGATAAAATTCGACCGAAGT 992
|||||||||||| |||||||||||||| |||||| ||||
Sbjct 1000 AGACATGTGGAACGATGAATGATAAAAGTCGACCAAAGT 1038
> AT1G52930.1 | Symbols: | Ribosomal RNA processing Brix domain
protein | chr1:19711237-19713230 FORWARD LENGTH=1114
Length=1114
Score = 922 bits (499), Expect = 0.0
Identities = 821/975 (84%), Gaps = 27/975 (3%)
Strand=Plus/Plus
Query 20 ACaaaaaaaTGGGGAGGAAGAGAAAGCACAGCGAGACTGTTGCGGCGGCACCGGCGAAGC 79
|||||||||||||||||||| | |||||||| ||||| | || |||| |||| |||
Sbjct 17 ACAAAAAAATGGGGAGGAAGCGGAAGCACAGTGAGACGGAAGCTCCGGCGCCGGTGAAAA 76
Query 80 AGAACGAT---TCTGCTCCGGAGAGACCTAAAAGGACTCTTTTGGGTTGGAAAGATAAGA 136
||| |||| |||||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 77 AGAGCGATGAGCCTGCTCCGGATAGACCCAAAAGGACTCTATTGGGATGGAAAGATAAGA 136
Query 137 ACGAA---GATGCTGAGGACTCTAAA-C-----CTACGTCTGTATTCAGGAATAAAGAGA 187
||| || |||||| | ||||| | || | |||| ||||| ||| |||||||
Sbjct 137 GTGAAGGTGAAGCTGAGAAAGCTAAAGCTTTGACTTCATCTGGATTCAAGAACAAAGAGA 196
Query 188 AGGTTCTCGTTACTTGTTCCCGTCGCATCAGTTTCAGGTATCGGCA-TTTGATGTTGAAC 246
||||| | || |||||||| ||||| |||||||||||||||||| | |||||||||||||
Sbjct 197 AGGTTTTGGTGACTTGTTCTCGTCGTATCAGTTTCAGGTATCGG-AGTTTGATGTTGAAC 255
Query 247 ATGGTGTCACTTTTACCTCACTGTAAGAAGGATAGTAAGGTGGAAGCTAAGAGCAGTAGA 306
|| || |||||| |||| ||||||||||| || ||||| || ||||| ||||| || | |
Sbjct 256 ATTGTTTCACTTCTACCACACTGTAAGAAAGACAGTAAAGTTGAAGCAAAGAGTAGCAAA 315
Query 307 GGTGCCACTCTT-AATGAGCTCATCGAGCTTAAGGGCTCTTCTTCTTGTTTGTTTTTCGA 365
|| || ||| || ||||||||||| ||||||||| ||| ||| || ||||| |||||
Sbjct 316 GGCGCGACT-TTGAATGAGCTCATTGAGCTTAAGAATTCTAATTCCTGCTTGTTCTTCGA 374
Query 366 GTGTAGGAAGCACAAAGATCTTTACATGTGGATGGTCAAGTCCCCTGGTGGTCCTTCCGT 425
||||||||| || |||||||||||||||||||||||||| |||||| ||| || || ||
Sbjct 375 GTGTAGGAAACATAAAGATCTTTACATGTGGATGGTCAAATCCCCTAATGGACCATCTGT 434
Query 426 TAAGTTCTTGGTTAATGCTGTTCACACAATGGAGGAGCTGAAACTCACTGGAAATCATCT 485
||||| |||||||| ||||| ||| ||||||| ||| ||||||||||||||||||||||
Sbjct 435 GAAGTTTTTGGTTAAAGCTGTGCACGCAATGGAAGAGATGAAACTCACTGGAAATCATCT 494
Query 486 GAAAGGTTCACGCCCACTTTTGACATTCTCATCCAATTTTGAAAAAGATGCACACTGGAA 545
||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 495 CAAAGGGTCACGTCCACTTTTGACATTCTCATCCAATTTTGATAAAGATGCGCACTGGAA 554
Query 546 ACTTCTTAAAG-AGATG-TTAACTCAGATTTTTGGAATTCCCGAGGGACATAGGAAGTCT 603
||| ||| ||| ||||| ||| ||||| | || |||||||| ||| ||| ||||| |||
Sbjct 555 ACT-CTTGAAGGAGATGCTTA-CTCAGGTCTTCGGAATTCCTAAGGAACACAGGAAATCT 612
Query 604 AAACCTTACCATGACCATGTGTTTGT-TTTCTCCATTGTTGATGACCATATTTGGTTCCG 662
|| ||||||||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||
Sbjct 613 AAGCCTTACCATGACCATGTATTTGTCTTT-TCAATTGTTGATGAGCATATATGGTTCCG 671
Query 663 TAATTACCAGATATCGGTACCTCATAACGAGTCAGACAAGATTGCACGAGGCGATCTGGA 722
||||||||||| ||||| ||||| || |||||||| || |||||| ||| | |||||
Sbjct 672 AAATTACCAGATTTCGGTTCCTCACAATGAGTCAGATAAAATTGCAAAAGGTGGCCTGGA 731
Query 723 TAAAATGACTCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATTAAGATATTTG- 781
||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||||| |
Sbjct 732 TAAAATGACCCTTATCGAGGTTGGTCCAAGGTTTTGTCTGAATCCAATCAAGATATTCGC 791
Query 782 GAGGCAGCTTTGGAGGTCCAACGCTTTACGAGAACCCATTCTATGTATCTCCAAACCAGA 841
| ||||||||||||||||| || ||||| |||||||| || || ||||||||||||||||
Sbjct 792 G-GGCAGCTTTGGAGGTCCTACTCTTTATGAGAACCCGTTATACGTATCTCCAAACCAGA 850
Query 842 TTCGAGCTTTGGagaaaagaaataaagctgggaaatttgctaagaaaatcaaggcgaaaa 901
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 851 TTCGAGCATTGGAGAAGAGAAATAAAGCTGGGAAATTTGCTAAGAAGATCAAGGCGAAGA 910
Query 902 caagaagaaaa-atGCATGAACTCTCAAACCCATTGGAGCCTGATGAATTTACAGACATG 960
| || | |||| |||||||| ||||||||||| |||||||||||||| ||| |||| |||
Sbjct 911 CGAGGA-AAAAGATGCATGAGCTCTCAAACCCGTTGGAGCCTGATGAGTTTGCAGATATG 969
Query 961 TGGAAGGATGAATGA 975
||||| ||||| |||
Sbjct 970 TGGAAAGATGA-TGA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48727122590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5