BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929351
Length=2699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15470.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4340 0.0
> AT3G15470.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5216262-5220218 REVERSE LENGTH=3370
Length=3370
Score = 4340 bits (2350), Expect = 0.0
Identities = 2592/2707 (96%), Gaps = 23/2707 (1%)
Strand=Plus/Plus
Query 1 GCTGGCTTCAT---TGCTACGACCATGAGCTACCACAACGAGGAAGAAGAGG-A--AGGA 54
||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||
Sbjct 327 GCTGGCTTCATCACAGCTACGACCATGAGCTACCAAAACGAGGAAGAAGAGGAAGGAGGA 386
Query 55 GACACCAACGATTGCTTCTACGAGTCTCTTGATCGTTTAGCTTCTTCCTCTTCTTGCTCT 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GACACCAACGATTGCTTCTACGAGTCTCTTGATCGTTTAGCTTCTTCCTCTTCTTGCTCT 446
Query 115 TGTTCCGCTTCTAACTCTGATTACGATTCCGAATCCTCTCCTCGGATCTCCTCCGCCGCT 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TGTTCCGCTTCTAACTCTGATTACGATTCCGAATCCTCTCCTCGGATCTCCTCCGCCGCT 506
Query 175 TCTCATGACCCTGAAGAACACAACGGTGGGGGTCGCCGCCGCCGATATCCATTCCCAGTT 234
||||||||| ||||||||| | ||||||| ||||||||||| ||||| |||||||| |||
Sbjct 507 TCTCATGACTCTGAAGAACTCTACGGTGGTGGTCGCCGCCGTCGATACCCATTCCCTGTT 566
Query 235 CCTCGGTTTCCAATGGGAGCCTCAAAGTTCGACGTTTGGATCTCTGAACCTGCTTCTGTC 294
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||
Sbjct 567 CCTCGGTTTCCAATGGGAGCTTCGAAGTTCGACGTTTGGACCTCTGAACCTGCTTCTGTC 626
Query 295 TCCGAGAGACGTTCCAAGCTTTTAAACGAAATGGGTCTTAGCCGTGACCCGGTTCTCTCC 354
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TCTGAGAGGCGTTCCAAGCTTTTAAACGAAATGGGTCTTAGCCGTGACCCGGTTCTCTCC 686
Query 355 CGGTTAAAACCCGTTTCGGA---TTCCAGCTCCAAAGAAACCGGAGAAGGCAGCTCCGAC 411
||||||||||||||||| || ||||||||||||||| ||||||| | | ||| |||
Sbjct 687 CGGTTAAAACCCGTTTCAGATTCTTCCAGCTCCAAAGATACCGGAGCCGCCGGCTTCGAG 746
Query 412 ATTTCCCGATCGATCTCGTGTAATCAATTGGCTCGGCGAGATCATGGAGAGTGTTTTGAA 471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 747 ATTTCTCGATCGATCTCGTGTAATCAATTGGCTCGGCGAGATCATGGAGAGTGTTCTGAA 806
Query 472 ACTGTCGGCGGTTGTGCTTCTTGCATCGTGAGATCGAAATCCGACATTACCACTAGCCAA 531
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 807 AGTGTCGGCGGTTGTGCTTCTTGTATCGTGAGATCGAAATCCGACATTACCACTAGCCAA 866
Query 532 TGTGGTGATCGTGAACGTCGATATACGTCTCTTGGTAATTCTTGTTCTTGTTCAGTCTCT 591
|||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct 867 TGTGGTGATCGTGACCGTCGATATACGTCTCCTGGTAATCCTTGTTCTTGTTCCGTCTCT 926
Query 592 AAACTCTCTGTTCGTCATCCTTCACATTCAGAGATCAGTAGAACCAGCCCACCATTTGTC 651
||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 927 AAACTCTCTGTTCATCATTCTTCACATTCAGAGATCAGTAGAACCAGCTCGCCATTTGTG 986
Query 652 AATTGCAGTTTGGGATCAGTTAGTGCTGATTCGTGTGAGAATTCATTGCGGTTAAATGGA 711
||||||||| | |||||||||| | || | | | ||||||||||||||||||||
Sbjct 987 AATTGCAGTGTAGGATCAGTTA--G-TG---C---T--G-ATTCATTGCGGTTAAATGGA 1034
Query 712 GATACTGACTGTGTACTGAGCGAGAGTGTAGTGAATGAGGAAGTGGAAGTGTGTACTATT 771
||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GATTCTGATTGTGTACTGAGAGAGAGTGTAGTGAATGAGGAAGTGGAAGTGTGTACTATT 1094
Query 772 AAGAATCTTGATAATGGGAAAGAGTTTGTGGTGAATGAGATTCAAGAAGACGGTACATGG 831
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1095 AAGAATCTTGATAATGGGAAAGAGTTTGTGGTGAATGAGATTCAAGAAGATGGTACATGG 1154
Query 832 AAGAAGGTGAAGGAAGTGGGAACTGGAACGCAGATGACGATGGAGGAGTTTGAGATGTGT 891
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1155 AAGAAGGTGAAGGAAGTGGGAACTGGAACACAGATGACGATGGAGGAGTTTGAGATGTGT 1214
Query 892 GTTGGACATTCTCCCATTGTTCAGGAGCTTATGAGAAGACAGAACGTTGAGGATTCTGAT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GTTGGACATTCTCCCATTGTTCAGGAGCTTATGAGAAGACAGAACGTTGAGGATTCTGAT 1274
Query 952 AAGAACACGTCTAAGGAAAACGAAGACAGTGGGAATAGTAATAAGGATAATGCATCGAAG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1275 AAGAACACGTCTAAGGAAAACGAAGACAGTGGGAATAGTAATAAGGATAATGCATCCAAG 1334
Query 1012 TCTAAGAAGAAAGGAAGTTGGTTTAAGAGTATTAAGAGTGTTGCAAGTAGCATGACTGGT 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TCTAAGAAGAAAGGAAGTTGGTTTAAGAGTATTAAGAGTGTTGCAAGTAGCATGACTGGT 1394
Query 1072 CATAGCAAAGAGAGACGAAGCAGCGATGATAGAGATACATCGTCAGAGAGAGGTGGTCGG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CATAGCAAAGAGAGACGAAGCAGCGATGATAGAGATACATCGTCAGAGAGAGGTGGTCGG 1454
Query 1132 AGGTCGAGCTCTGCTACTGATGATTCTCAGGAATCTTCTTTTCACGGGCCGGAAAGAGTT 1191
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1455 AGGTCGAGCTCTGCTACTGATGATTCTCAGGAATCTTCTTTTCATGGGCCGGAAAGAGTT 1514
Query 1192 AGGGTTAGACAGTATGGGAAATCATCTAAAGAGCTCACGGCATTGTACAAGACGCAGGAG 1251
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1515 AGGGTTAGACAGTATGGGAAATCATCTAAAGAGCTCACGGCATTGTACAAAACGCAGGAG 1574
Query 1252 ATTCAAGCGCATAATGGTTCTATTTGGAGCATTAAGTTTAGTTTGGATGGTAAATATCTT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 ATTCAAGCGCATAATGGTTCTATTTGGAGCATTAAGTTTAGTTTGGATGGTAAATATCTT 1634
Query 1312 GCTAGTGCTGGTGAGGATTGCATCGTTCATATCTGGCAAGTCGTCGAGGCTGAGAAGAAG 1371
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1635 GCTAGTGCTGGTGAGGATTGCATCATTCACATCTGGCAAGTCGTTGAGGCTGAGAAGAAG 1694
Query 1372 GGAGAGTTGCTACTTGATAGACCGGAACTGTTGCTTTTGGCTAATAATGGGTCTCCAGAA 1431
|| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1695 GGTGAGTTGTTACTTGATAGACCGGAACTGTTGCTTTTGGCTACTAATGGGTCTCCAGAA 1754
Query 1432 CCAACTACTATGTCACCAAGGAGAAGAGGGAGAACTTCTATAAGTAGAAAGTCATTGAGT 1491
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 CCGACTACTATGTCACCAAGGAGAAGAGGGAGAACTTCTATAAGTAGAAAGTCATTGAGT 1814
Query 1492 TTAGAGAACATATTTGTTCCAGATTCTCTTTTCGGGCTTTCGGAAAAGCCCTTTTGTTCC 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1815 TTAGAGAACATATTTGTTCCAGATTCTCTTTTCGGGCTTTCGGAAAAGCCCTTTTGTTCC 1874
Query 1552 TTTCAGGGACATGTGGATGATGTACTTGACCTTGCTTGGTCCAAGTCTCAGTATTTGCTT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1875 TTTCAGGGACATGTGGATGATGTACTTGACCTTGCTTGGTCCAAGTCTCAGCATTTGCTC 1934
Query 1612 TCTTCATCAATGGATAAAACAGTTCGTTTGTGGAACTTGTCCAGCCAGACTTGCTTGAAA 1671
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1935 TCTTCATCAATGGATAAAACAGTTCGTTTGTGGAATTTGTCCAGCCAGACTTGCTTGAAA 1994
Query 1672 GTATTTTCGCACAGTGATTACGTGACTAGCATCCAATTTAATCCGGTCGATGATAGATAC 1731
||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 1995 GTATTTTCGCACAGTGATTACGTGACTTGCATTCAATTTAATCCGGTTGATGATAGATAC 2054
Query 1732 TTTATCAGCGGATCCTTAGATGCAAAAGTTCGCGTCTGGAGCATTCCAGATCGTCAAGTA 1791
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 TTCATCAGTGGATCCTTAGATGCAAAAGTTCGCGTCTGGAGCATTCCAGATCGTCAAGTA 2114
Query 1792 GTTGACTGGTATGATCTTCATGAGATGGTCACTTCTGCTTGCTACACTCCAGATGGTCAG 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 GTTGACTGGTATGATCTTCATGAGATGGTCACTTCTGCTTGCTACACTCCAGATGGTCAG 2174
Query 1852 GGTGCGTTGGTTGGTTCATACAAAGGTAGCTGTCGCATGTATAGTGCATCAGATAACAAG 1911
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2175 GGTGTGTTGGTTGGTTCATACAAAGGTAGCTGTCGGATGTACAGTGCATCAGATAACAAG 2234
Query 1912 CTGCAACAGAAAAGCCTGATAAATTTACAGAACAAGAAGAAGAAAGCTCATCaaaaaaaG 1971
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2235 CTGCAACAGAAAAGCCAGATAAATTTACAGAACAAGAAGAAGAAAGCTCATCAAAAAAAG 2294
Query 1972 ATAACTGGTTTCCAGTTTGTGCCTGGGAGCTCATCTGAAGTGCTTGTCACATCTTCCGAT 2031
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ATAACTGGTTTCCAGTTTGTTCCTGGGAGCTCATCTGAAGTGCTTGTCACATCTTCCGAT 2354
Query 2032 TCAAGGATCCGTGTTGTTGATGGAACTGATCTAGTTAACAAACTTAAAGGGTTTCGGAAT 2091
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2355 TCAAGGATCCGTGTTGTTGATGGAACTGATCTAGTTAACAAACTTAAAGGGTTTCGAAAT 2414
Query 2092 ACGAGCAGCCAGATATCTGCCTCAATCACAGCAGATGGGAAATACGTAGTTTCAGCGAGC 2151
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2415 ACGAGCAGCCAGATCTCTGCCTCAATCACAGCAGATGGGAAATACGTAGTTTCAGCAAGC 2474
Query 2152 GAGGATTCGCATGTGTACATATGGAAATACGAATCCCCTGCTTCTCGACCAAGCAGAAGT 2211
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2475 GAGGATTCACACGTGTACATATGGAAGTACGAATCCCCTGCTTCTCGACCAAGCAGAAGT 2534
Query 2212 AACAACAACAAGAACGTGACGGTCACAAACTCTTACGAGCATTTCCATAGCCAAGACGTC 2271
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2535 AACAACAACAAGAACGTGACAGTCACAAACTCTTACGAGCATTTCCATAGCCAAGACGTC 2594
Query 2272 TCTGCAGCCATCTCATGGCCCGGAATGGCTTCAACAGAAAACTGGGGAACTCAAAACAGA 2331
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 2595 TCTGCAGCCATCTCATGGCCTGGAATGGCCTCAACAGAAAACTGGGGAACCCAAAACAGA 2654
Query 2332 GCCGGGTTTAACGGAAACACCAATAATTTGGACAATGTCTCCACAGCTAACCATCCGCCT 2391
|| ||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2655 GCGGGGTTTAACGGAAGCACCAATAACTTGGACAATATCTCCACAGCTAACCATCCGCCT 2714
Query 2392 ACACCCGTAGACCAGCCAGGGG-CAGTGGACCGATTAAACAGTCCAAGGAACGGGATCAT 2450
||||| |||||||||| |||| | ||||| ||||||||||||||| |||| ||||||||
Sbjct 2715 ACACCGGTAGACCAGCT-GGGGACTGTGGAGCGATTAAACAGTCCACGGAATGGGATCAT 2773
Query 2451 ATCGAGCGCAACAAACGGATACTTTTTCGATAGAATATCAGCGACTTGGCCTGAAGAGAA 2510
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2774 ATCGAGCGCAACAAACGGATACTTTTTCGATAGAATGTCAGCGACTTGGCCTGAAGAGAA 2833
Query 2511 ACTGTTGTTTGGAAGGAACAGAAGTGGGAATCGTCTGAGTACTGATATGTCGTCGTCAAA 2570
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2834 ACTGTTGTTTGCAAGGAACAGAAGTGGGAATCGTCTGAGTACGGATATGTCGTCGTCAAA 2893
Query 2571 TGGAAACTCAGGGAATGTATCAGCTTCTTGGGGAATGGTGATAGTCACTGCAGGTCTGAG 2630
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 2894 TGGAAACTCAGGGAATGTATCGGCTTCTTGGGGAATGGTGATTGTCACTGCAGGTCTCAG 2953
Query 2631 AGGAGAGATACGAACGTTTCAGAACTTTGGTTTGCCCATTCGGATTTGATAAAAAGTGTA 2690
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2954 AGGAGAGATACGAACGTTTCAGAACTTTGGTTTGCCCATTCGGATTTGATAAAAACTGTA 3013
Query 2691 CAGAGTG 2697
|||||||
Sbjct 3014 CAGAGTG 3020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134046071696
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5