BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929352
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15480.1 | Symbols: | Protein of unknown function (DUF1218)... 887 0.0
> AT3G15480.1 | Symbols: | Protein of unknown function (DUF1218)
| chr3:5226248-5227789 REVERSE LENGTH=892
Length=892
Score = 887 bits (480), Expect = 0.0
Identities = 540/570 (95%), Gaps = 0/570 (0%)
Strand=Plus/Plus
Query 2 TGAGCTCTGAGAAAATCCAGCAATGGCTTCGAAGCTTGTAGTTATAATCGTGTTTATCCT 61
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 102 TGAGCTCTGAGAAAATCCAGCAATGGCTTCGAAGCTTGTAGTGATAATTGTGTTTATCCT 161
Query 62 CGATCTCATCGCCGTTGGATTAGCCATTGCCGCCGAGCAGAGAAGAAGTGTCGGCAAGGT 121
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CGATCTCATCGCCGTTGGGTTAGCCATTGCCGCCGAGCAGAGAAGAAGTGTCGGCAAGGT 221
Query 122 GGAAACGGATAGAGAGAAGCAATTTGAGTACTGTGTTTATGGTACTGACATTGCTACAAG 181
||||| || ||||| ||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 222 TGAAACAGACAGAGACAAGCAATATGATTACTGTGTGTATGGTACTGACATTGCTACAAG 281
Query 182 CTATGGAGCTGGTGCATTTGTTCTTCTCTTTGTAAGCCAAGTCCTTATTATGGCTGCTAG 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TTATGGAGCTGGTGCATTTGTTCTTCTCTTTGTAAGCCAAGTCCTTATTATGGCTGCTAG 341
Query 242 TCGTTGCTTCTGCTGTGGGAAGTCCCTTAACCCAGGCGGTTCAAGAGCTTGTGCCATTAT 301
|||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 342 TCGTTGCTTCTGTTGTGGAAAGTCTCTTAACCCTGGCGGTTCAAGAGCTTGTGCCATTAT 401
Query 302 TCTCTTCCTCATCTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTAGCGGCATC 361
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 402 TCTCTTCCTCATTTGCTGGGTGTTTTTCTTGATCGCTGAGATGTGTTTGCTTGCGGCATC 461
Query 362 AATCAGAAACGCGTACCACACACAGTATAGAAAGTTTTGGGACGTTGAAGATCCACCAAG 421
||||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||
Sbjct 462 AATCAGAAATGCGTACCACACACAGTATAGAAAGATGTGGAAAGTTGAAGATCCACCAAG 521
Query 422 CTGTGAAGTTATAAGGAAAGGGGTTTTTGCAGCTGGTGCTGCATTCACACTCTTCACCGC 481
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 522 CTGTGAAGTTATAAGGAAAGGAGTTTTTGCAGCTGGTGCTGCATTCACACTCTTCACCGC 581
Query 482 CATTGTCTCTCAGTTCTACTATGTTTGCTACTCTCGTGCTAGAGATGCTTACCAGAATCA 541
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 582 CATTGTCTCTCAGTTCTACTACGTTTGCTACTCTCGTGCTAGAGATGCGTACCAGAATCC 641
Query 542 TTCCTACTAGAAGTGTCGACTTCCACAGCA 571
|||||||| || |||| ||||||||||||
Sbjct 642 CTCCTACTAAAAATGTCAACTTCCACAGCA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27427844262
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5