BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929360

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15534.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   316    5e-86


> AT3G15534.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G52855.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr3:5258876-5259082 FORWARD LENGTH=207
Length=207

 Score =  316 bits (171),  Expect = 5e-86
 Identities = 195/207 (94%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  21   ATGGTGTGTTTCTGTTTCTTGGTGGACCAGAAGAGGAAAATAAAAGGAAGCAAACCGGCG  80
            ||||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||
Sbjct  1    ATGGTGTGTTTCTGTTTCTTGGTTGACCAGAAGAGGAAGGTTAAAGGAAGCAAACCGGCG  60

Query  81   GCAGGAACGTGTTCCCGGTGTGGTTGTGGTGCAAGAATCGCCGACATGAAGACTTCGACG  140
            |||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct  61   GCAGGAACGTGTTCCCGGTGTGGTCGTGGTGCAAGAGTCGCCGATATGAAGACTTCGACG  120

Query  141  AGGTTCTGTCTTATACCTATTTATTGCAGATCTTGGAGAGCCATCGTCTGCTGCTTTTGC  200
            ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct  121  AGGTTTTGTCTTATACCTATTTATTGTAGATCTTGGAGAGCCATCGTCTGCAGCTTTTGC  180

Query  201  GGCTCTGTTCTTAAATCGTACCGTTGA  227
            ||||||||||||||||| || ||||||
Sbjct  181  GGCTCTGTTCTTAAATCCTATCGTTGA  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5