BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929366
Length=1396
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family pr... 2130 0.0
> AT3G15570.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr3:5269849-5271922 REVERSE LENGTH=1999
Length=1999
Score = 2130 bits (1153), Expect = 0.0
Identities = 1323/1405 (94%), Gaps = 12/1405 (1%)
Strand=Plus/Plus
Query 1 TGTGAA-CAAAAAACTCGAAACAAATGAAGAAAACACCTTCGCCGGAACCAGTCACCATC 59
|||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 199 TGTGAAGAAAAAAACTCGAAACAAATGAAGAAAACACTTTCGCCGGAACCCGTCACCATC 258
Query 60 TACGGCAATCAG-CAAGAAACCTTCGTCGGAGATATGGAGTACTACACTTACTTCGACGA 118
|||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 259 TACGGCAATC-GCCAAGAAACCTTCGTCGGTGATATGGAGTACTACACTTACTTCGACGA 317
Query 119 ATCTTGTATCCATGACATGAACTATTTCGTCAAAACAATCACCGGAATCAAATCCAAAGG 178
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 318 ATCTTGTATCCAAGACATGAACTATTTCGTCAAAACAATCACCGGCATCAAATCCAAAGG 377
Query 179 AATCCGACCAGACCTCATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 238
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AATCAGACCAGACCTTATCGGTTCCATCATCGCTCATTACGCTTCAAAATGGCTCCCTGA 437
Query 239 TCTCTCCGGCAACGTCTCCGCCATCA-TT--TCCACCTCCGTAGAATCCAAGAACCACCT 295
|||||||||||| ||||||||||| | || ||||||||| |||||||||||||| |||
Sbjct 438 TCTCTCCGGCAATGTCTCCGCCATTATTTCCTCCACCTCCTTAGAATCCAAGAACAACCA 497
Query 296 CAATGACACACAGCCGGAGAGCGTCACGGCGTCTGTTATGAAGAAACGATTTTTCGTCGA 355
||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 498 CAATGACACACAGCCAGAGAGCGTCACTGCATCTGTAATGAAGAAACGGTTTTTCGTCGA 557
Query 356 AACACTAATCGGAATCCTCCCGCCGGAGAAAGACTCTGTTCCTTGCAATTTCCTTCTCCG 415
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 558 AACACTAATCGGAATCCTCCCACCGGAGAAAGACTCTGTTCCTTGCAATTTCCTCCTCCG 617
Query 416 TCTCCTCAGGGCAGCGAAAATGGTCGGAGCTAATCCGAACTACTTAACGGAGCTTGAAAC 475
|||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 618 TCTCCTCAGGACAGCGAAAATGGTCGGAGCTAATCCGAATTATTTAACGGAGCTTGAAAC 677
Query 476 CAGAGTCTCGTGGCAGCTTGACCAAGCCTCTCTCAAGGAGCTTATGATACCTTCTTTCAG 535
|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 678 CAGAGTATCGTGGCAGCTCGACCAAGCTTCTCTCAAGGAGCTTATGATACCTTCCTTCAG 737
Query 536 CTACACGTCTGGTACTTTGCTTGACGTTGAGCTTGTGACACGTCTCGTGAACAAATTTGC 595
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |
Sbjct 738 CTACACGTCTGGTACTTTGCTTGACATTGAGCTTGTGACGCGTCTCGTGAACAAGTTTTC 797
Query 596 TGGATTGGATAGTGAAGGTGTTAAAACCAG-TGCGGCTCTTGTTAAAGTGGCCAAGCTTG 654
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 798 TGGATTGGATAGTGAAGGTGTTAAAACC-GCTGCGGCTCTTGTTAAAGTGGCCAAGCTTG 856
Query 655 TTGATTCGTACCTCGCTGAAGCAGCCGTTGACGGTGGTTTGGCTTTACCGGAGTTTATAT 714
|||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 857 TTGACTCCTACCTCGCTGAAGCTGCCGTTGACGGTGGTTTAGCTTTACCGGAGTTTATTT 916
Query 715 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGGGCCA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 917 CCTTAATCACAGCTCTTCCTAGCCATGCTCGTACTACAGAGGATGGCTTGTACCGAGCCA 976
Query 775 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGCA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 977 TTGATACATATCTCAAGGCACATCCTCAGGTGTTGAAGCAAGAAAGGAAGGAACTTTGTA 1036
Query 835 GGCTTATTGATAGCAGAAAGCTATCACCAGAAGCAGCTCTTCACGCGGCTCAGAATGATC 894
| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1037 GACTTATTGATAGCAGAAAGTTATCACCGGAAGCAGCTCTTCACGCGGCTCAGAATGATC 1096
Query 895 GTTTACCGGTGAGAGCAATCATTAGAGTTTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 954
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1097 GTTTACCGGTGAGAGCAATCATTGGAGTGTTGTTCACTGAGCAGACAAAGCTAAGTCGTC 1156
Query 955 ACATTGACTGGAATGGTAGCTCTATAAGCAGCACGACGAAGAGTCCAACAAACCCTTCTG 1014
|||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||| ||||||
Sbjct 1157 ACATTGACTGTAATAGTAGCTCGATAAGCAGCACTACGAGGAGTCCAACAAACGCTTCTG 1216
Query 1015 GTTCACATTACTTGGAGGGAGGTTCTGCAGCGCGGTGCTTGTCTAAACGTGAGATGAATG 1074
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1217 GTTCACATTACCTCGAGGGAGGTTCTGCAGCGCGGTGTTTGTCTAAACGTGAGATGAATG 1276
Query 1075 TTCAGCAAGCAGAGATAAGAAGGCTTCGAGAAGATGTGGTGAGGCTGCAGAGCCAGTGCA 1134
|||| |||||||||||||||||||| || || |||||||||||||||||||| |||||
Sbjct 1277 TTCAACAAGCAGAGATAAGAAGGCTACGGGAGGATGTGGTGAGGCTGCAGAGTCAGTGTG 1336
Query 1135 GTGCTATGCATTTGCAGGTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGAAGTAAAG 1194
| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1337 GCGCTATGCATTTCCAGCTGGAGAGGCTTATGGAGAAGAAGAGTAGTGGTGGGAGTAAAG 1396
Query 1195 GGTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGCGTTG 1254
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1397 GTTTTTTCCGGTGGAAGAGGCTCGGGTTAGTACCGTCAATTAGAGGAAGTGTTAGTGTTG 1456
Query 1255 AAAAAGGTGAGGAAGAATCTGGTGA---TGGTGAAGGATTTGAGCCTCGGACTCCTGGGA 1311
|||| || ||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1457 AAAAGGGCGAGGAAGAATCTGGTGACAATGGTGAAGGATTTGAGCCACGGACTCCTGGTA 1516
Query 1312 ATATGAAGACAAGGCTTGTCAAAGGAAGAACGACACCTTCAAGGTGGAGAAAATCTATGT 1371
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1517 ATATGAAGACAAGGCTTGTCAAAGGAAGAACAACACCTTCAAGGTGGAGAAAATCTATGT 1576
Query 1372 CTTAAATCTTGAATTAATGAAAACA 1396
||||| |||||||||||||||||||
Sbjct 1577 CTTAA-TCTTGAATTAATGAAAACA 1600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68774746650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5