BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929378
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15650.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1055 0.0
AT1G52700.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 806 0.0
> AT3G15650.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:5305918-5307932 FORWARD LENGTH=1081
Length=1081
Score = 1055 bits (571), Expect = 0.0
Identities = 621/646 (96%), Gaps = 0/646 (0%)
Strand=Plus/Plus
Query 163 CAGCTCTTCTCAGCTCTTGGAGAGCCTACCTCTTCCAAACATAAAATGGATTTGTCCAAC 222
|||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 286 CAGCTCGTCTCAGCTATTGGAAAGCCTACCTCTTCCAAACATCAAATGGATTTGTCCAAC 345
Query 223 TGCTCCTTCGCGTCCTGTTTCGCTTCTGGGTGGATTCCCTTGCACTGCCTGGTTTGACGT 282
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 346 TGCTCCTTCGCGTCCTGTTTCGCTTCTCGGTGGATTTCCTTGCACTGCCTGGTTTGACGT 405
Query 283 GGGAGAAATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGGAGAAATTTCTGAGGATCTTCATGATGATATAGAAGGCTTAGATGCTTCAGCTGCACA 465
Query 343 TATTGCTAACCTCTTATCCGCTGAACCAACAGATGTCAAAGTTGGGATAGGAGGTTTCAG 402
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 466 TATTGCTAACCTATTATCTGCTGAGCCAACAGATGTCAAAGTTGGGATAGGAGGTTTCAG 525
Query 403 TATGGGTGCAGCAATAGCTCTCTACTCCACAACGTGCTACGCTCTTGGGCGTTATGGAAC 462
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 526 TATGGGTGCAGCAATAGCTCTCTACTCCACGACGTGCTACGCTCTTGGACGTTATGGAAC 585
Query 463 CGGACATCCTTATACTATTAACCTACGAGCTACTGTAGGACTTAGTGGTTGGCTTCCTGG 522
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 586 CGGACATGCTTATACTATAAACCTACGAGCTACTGTAGGACTTAGCGGTTGGCTTCCTGG 645
Query 523 TTGGAGGAGCTTAAGGAGCAAAATAGAAAGTTCTAATGAGGTTGCAAGGCGCGCTGCATC 582
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 646 TTGGAGGAGCTTAAGGAGCAAAATAGAAAGTTCGAATGAGGTTGCAAGGCGCGCTGCATC 705
Query 583 GATACCAATCATACTTGCACATGGAACTTCGGATGACGTAGTACCTTATAGATTTGGAGA 642
|||||| ||| |||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 706 GATACCGATCTTACTTGCACATGGAACTTCGGACGATGTAGTTCCTTATAGATTTGGAGA 765
Query 643 AAAATCTGCCCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 702
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 AAAATCTGCTCATTCACTTGCCATGGCTGGATTCCGACAAACTATGTTCAAACCATATGA 825
Query 703 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGCCTC 762
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 826 AGGGCTTGGTCACTATACGGTTCCTAAAGAAATGGATGAGGTGGTTCACTGGCTCGTCTC 885
Query 763 AAGGCTTGGTCTCGAGGGCTCGCGTTAAACTCTGCAAGCATCTTCT 808
|||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 886 AAGGCTTGGTCTCGAGGGTTCGCGTTAAACTTTACAAGCATCTTCT 931
Score = 279 bits (151), Expect = 2e-74
Identities = 163/168 (97%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1 GAAAAAAGATCATT---CAACAACAATGAGCTATTCTCATCAAAGCATGGGTTCTGGTAG 57
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 64 GAAAAAAGATCATTGAACAACAACAATGAGCTATTCTCGTCAAAGCATGGGTTCTGGTAG 123
Query 58 TAGAAGTACAAGGGGCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCA 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TAGAAGTACAAGGGGCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCA 183
Query 118 CCAAGCTACTATTGTTTGGTTGCATGGTCTTGGAGACAATGGCTCCAG 165
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 184 CCAAGCTACTATTGTTTGGTTGCACGGTCTTGGAGACAATGGCTCCAG 231
> AT1G52700.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19631126-19633440 REVERSE LENGTH=902
Length=902
Score = 806 bits (436), Expect = 0.0
Identities = 670/785 (85%), Gaps = 7/785 (1%)
Strand=Plus/Plus
Query 13 TTCAAC-AACAATGAGCTATTCTCATCAAAGCATGGGTTCTGGTAGTAGAAGTACAAGGG 71
|||||| || |||||| || ||||||||||||||||||||||||||||||| | ||||||
Sbjct 64 TTCAACAAAAAATGAGTTACTCTCATCAAAGCATGGGTTCTGGTAGTAGAAATGCAAGGG 123
Query 72 GCTATGAGTTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCACCAAGCTACTATTG 131
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 124 GATATGAATTTGGAAGGACTTATGTTGTGAGGCCTAAAGGAAAGCATCAAGCCACTCTAG 183
Query 132 TTTGG-TTGCATGGTCTTGGAGACAATGGCTCCAGCTCTTCTCAGCTCTTGGAGAGCCTA 190
| ||| || ||||||||||| ||||||||||| || || ||||||||| |||| ||| |
Sbjct 184 TCTGGCTT-CATGGTCTTGGTGACAATGGCTCTAGTTCATCTCAGCTCATGGACAGCTTG 242
Query 191 CCTCTTCCAAACATAAAATGGATTTGTCCAACTGCTCCTTCGCGTCCTGTTTCGCTTCTG 250
| ||||||||| |||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 243 CATCTTCCAAATATAAAATGGATTTGTCCAACCGCTCCTTCGCGTCCTGTTACAAGTCTT 302
Query 251 GGTGGATTCCCTTGCACTGCCTGGTTTGACGT-GGGAGAAATTTCTGAGGATCTTCATGA 309
|||||||| | |||||||| ||||||||||| ||| ||||||||||| ||| ||||||
Sbjct 303 GGTGGATTTACATGCACTGCTTGGTTTGACGTTGGG-GAAATTTCTGAAGATGGTCATGA 361
Query 310 TGATATAGAAGGCTTAGATGCTTCAGCTGCACATATTGCTAACCTCTTATCCGCTGAACC 369
|||| | ||||| |||||||| |||||| |||||||||||||||| || ||| |||||||
Sbjct 362 TGATTTGGAAGGTTTAGATGCCTCAGCTTCACATATTGCTAACCTTTTGTCCTCTGAACC 421
Query 370 AACAGATGTCAAAGTTGGGATAGGAGGTTTCAGTATGGGTGCAGCAATAGCTCTCTACTC 429
| ||||||| ||||| || ||||||||||| || ||||| ||||||||| ||||||||||
Sbjct 422 AGCAGATGTTAAAGTAGGCATAGGAGGTTTTAGCATGGGAGCAGCAATATCTCTCTACTC 481
Query 430 CACAACGTGCTACGCTCTTGGGCGTTATGGAACCGGACATCCTTATACTATTAACCTACG 489
| | || || || |||||||| ||||||||||| || ||| | ||| |||| |||||||
Sbjct 482 CGCGACTTGTTATGCTCTTGGACGTTATGGAACTGGCCATGCGTATCCTATAAACCTACA 541
Query 490 AGCTACTGTAGGACTTAGTGGTTGGCTTCCTGGTTGGAGGAGCTTAAGGAGCAAAATAGA 549
|||| ||||||||| || || |||||||||||||||| |||||||||||||||||||||
Sbjct 542 AGCTGTTGTAGGACTCAGCGGCTGGCTTCCTGGTTGGAAGAGCTTAAGGAGCAAAATAGA 601
Query 550 AAGTTCTAAT-GAGGTTGCAAGGCGCGCTGCATCGATACCAATCATACTTGCACATGGAA 608
| |||| | | |||| ||||||||| ||||||||| ||||||| |||||| |||||||||
Sbjct 602 ATGTTC-ATTTGAGGCTGCAAGGCGTGCTGCATCGTTACCAATTATACTTACACATGGAA 660
Query 609 CTTCGGATGACGTAGTACCTTATAGATTTGGAGAAAAATCTGCCCATTCACTTGCCATGG 668
|||| ||||| || || |||||||| |||||||| |||||||| || || |||| |||||
Sbjct 661 CTTCCGATGATGTGGTTCCTTATAGGTTTGGAGAGAAATCTGCGCAGTCTCTTGGCATGG 720
Query 669 CTGGATTCCGACAAACTATGTTCAAACCATATGAAGGGCTTGGTCACTATACGGTTCCTA 728
||||||| |||| | | ||||| |||||||| ||||| |||||||| ||||| ||||| |
Sbjct 721 CTGGATTTCGACTAGCCATGTTTAAACCATACGAAGGACTTGGTCATTATACCGTTCCCA 780
Query 729 AAGAAATGGATGAGGTGGTTCACTGGCTCGCCTCAAGGCTTGGTCTCGAGGGCTCGCGTT 788
||||||||||||||| |||||||||||| | | | ||| || || ||||||||||| |
Sbjct 781 GAGAAATGGATGAGGTCGTTCACTGGCTCACAACGATGCTCGGACTTGAGGGCTCGCGCT 840
Query 789 AAACT 793
|||||
Sbjct 841 AAACT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5