BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929390

Length=396
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   575    1e-163


> AT3G15780.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G52550.1); 
Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5341426-5342557 
FORWARD LENGTH=568
Length=568

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 358/381 (94%), Gaps = 2/381 (1%)
 Strand=Plus/Plus

Query  17   AAAAATGGCGATGGCTTTGTCCAACACGACCACAAGCTCTAACCTCAACCACTACTCAAT  76
            ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct  5    AAAAATGGCGATGGCTTTGTCCAACCCGACCACAAGCACTAACCTCTACCACTACTCAAT  64

Query  77   TCTCTCGCCGTTCTCATCGCCGTATCACCTTCACCGTCGAAGCATCGTCCTACTCGCGAG  136
            |||||||||||||||| |||||||||||||||||||||||| || ||||||||| |||||
Sbjct  65   TCTCTCGCCGTTCTCACCGCCGTATCACCTTCACCGTCGAAACACCGTCCTACTAGCGAG  124

Query  137  TCCTTGCCGTTTACGCTGCCTCGCAGTTGCTGGTGGTCCTCCTTCTCCTCCAGGCCCTGA  196
            |||  ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct  125  TCCCCGCCGTTTACGCCGCCTCGCCGTCGCTGGTGGTCCTCCTTCTCCTCCAGGCCCTGA  184

Query  197  TCCACCTCCGCCTGAGGACACCACTCAGCTTGCAGGTCTTGTGGGAGCTGTGACAAGGAT  256
            ||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct  185  TCCGCCTCCGCCTGAGGACACCACTCAGCTAGAAGGTCTTGTGGGAGCTGTGACAAGGGT  244

Query  257  TCAAGACCGCGTAAAGATCTTCCTCGCAGTGtttttttGGATGTTTCTCTTCTTCTGGGT  316
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  245  TCAAGACCGCGTAAAGATTTTCCTCGCAGTGTTCTTTTGGATGTTTCTCTTCTTCTGGGT  304

Query  317  TACAGTGACAGATGGGA-GAGGTAAAGGCAAAGGCAAGAAGAGTTCACGTTTCAAATAGT  375
            |||||| |||||||||| | ||||||||||||||||||||| ||||||||||||| ||||
Sbjct  305  TACAGTCACAGATGGGACG-GGTAAAGGCAAAGGCAAGAAGGGTTCACGTTTCAAGTAGT  363

Query  376  TTCCATATATGAAGAGGCTTT  396
            |||||||||||||||||||||
Sbjct  364  TTCCATATATGAAGAGGCTTT  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18699602628


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5