BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929391
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding doma... 1048 0.0
> AT3G15790.1 | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain
11 | chr3:5343016-5344700 FORWARD LENGTH=1182
Length=1182
Score = 1048 bits (567), Expect = 0.0
Identities = 747/826 (90%), Gaps = 44/826 (5%)
Strand=Plus/Plus
Query 1 TTGCTAAA-GGAAAGGGAGAGAGATGGGTGGTGAAGAGGAAGTTGTATCTGTTGAGCTAC 59
|||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 82 TTGCTAAAGGGAAA-GGAGAGAGATGGGTGGTGAAGAGGAAGTTGTTTCTGTTGAGCTAC 140
Query 60 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCGAACAAAGTGGGTTCAGTGAAGAAAA 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 141 CAGCACCTTCTTCATGGAAGAAATTGTTTTACCCCAACAAAGTGGGTTCAGTGAAGAAAA 200
Query 120 CAGAGATTGTGTTTGTTGCTCCAACGGGTGAGGAGATCAGTAACAGAAAGCAGCTGGAGC 179
||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 201 CAGAGGTTGTGTTTGTGGCTCCAACGGGTGAGGAGATTAGTAACAGAAAGCAGCTGGAGC 260
Query 180 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCTGAGTTTGATTGGACGACTAGTG 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 261 AGTATCTCAAATCGCACCCTGGAAACCCCGCGATCGCAGAGTTTGATTGGACGACTAGTG 320
Query 240 GGACACCTAGGAGATCTGCAAGAATCAGCGAGAAGACTAAGGCTACGCCGTCACCAGATA 299
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 321 GGACACCTAGGAGATCTGCAAGAATCAGTGAGAAGACTAAGGCTACGCCGTCACCAGATA 380
Query 300 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTTCAGGGTCAAAGAAAGATGCAGAAG 359
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 381 AAGAGCCACCCAAGAAGCGAGGTAGAACCAAATCTCCAGTGTCAAAGAAAGATGCAGAAG 440
Query 360 GTGAGAAATCAGAGGGAGGAG-AG-G-AAAACTCTCATGTGAAAGATACTGAAATGAATC 416
||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 441 GTGAGAAATCAGAGGGAGGAGGAGAGGAAAACTCTCATGTGAAAGATACTGAAATGAATC 500
Query 417 CTCCAGAGGGAAACGTC-A-A-T-AA--TG--A--GA-A----TGGCTCTGGTGAAACTG 461
|||||||||||| || | | | | || || | || | |||||| ||||||||||
Sbjct 501 CTCCAGAGGGAATCGCCGAGAATGAAAATGTGACCGATAAGAATGGCTCCGGTGAAACTG 560
Query 462 GGAAGGTGAATGATGCAAAAGAAAACATGGTTGCAAAGGAAACTCCAAGTGCGACTCCAG 521
|| |||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||
Sbjct 561 AGAGGGTGAATGATGCAAAAGAAAACATTGTTGCTGAGGAAACTCCAAATGCGGCTCCAG 620
Query 522 TTCAAGAAGCGGGTGACCGTGAGTCGGTGAAGGAGAAAGGCTC-GGATTCAGTTGAAGAT 580
||||||||| |||||| || || |||||||||||| ||| |||||| ||||| |||
Sbjct 621 TTCAAGAAGAGGGTGA--GT----CGATGAAGGAGAAAG-CTCTGGATTCTGTTGATGAT 673
Query 581 AGTAGTAAGGAGAGAGTGGAGTCTCAGACTGACAAAGAAAAAGAGACTGGCTCAATCGAA 640
| || | | | || | || | |||||||||||||||| |||||||||||||||
Sbjct 674 A--AG-A-GTA-AG-G---AG----A--CTGACAAAGAAAAAGATACTGGCTCAATCGAA 718
Query 641 AAGAACTCGGTAGATACAGAGAAGAAGACCGTTGAAGCTAGTGATGAGCAGAAGAATTCT 700
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 AAGAACTCGGTAGATGTAGAGAAGAAGACCGTTGAAGCTAGTGATGAGAAGAAGAATTCT 778
Query 701 GAAGCTGCGACCAGAAACCATGAGGAAAATGGTCTGACAACAGAAGCTGAGGGGAAAGAG 760
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 779 GAAGCTGAGACCAGAAACCATGAAGAAAATGGTCTGACCACAGAAGCTGAGGGGAAAGAG 838
Query 761 AAAACCGCAGAAGCAGAAGCTACCGAATAGCCCTGCTCTGCTTCTG 806
||||| ||||||| ||||||||||| ||||||||| |||||| |||
Sbjct 839 AAAACAGCAGAAGGAGAAGCTACCGGATAGCCCTGTTCTGCT-CTG 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5