BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929394
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15820.1 | Symbols: ROD1 | phosphatidic acid phosphatase-rel... 1557 0.0
AT3G15830.1 | Symbols: | phosphatidic acid phosphatase-related... 833 0.0
> AT3G15820.1 | Symbols: ROD1 | phosphatidic acid phosphatase-related
/ PAP2-related | chr3:5351071-5353728 FORWARD LENGTH=1207
Length=1207
Score = 1557 bits (843), Expect = 0.0
Identities = 928/970 (96%), Gaps = 2/970 (0%)
Strand=Plus/Plus
Query 1 TCCCTCTCCGTTAA-CTCTAACGGCCATGACAGCCGCCGCAACTGAAACCGACGTCTCTC 59
|||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 122 TCCCTCTCCGTTAACCT-TAACGGCCATGTCAGCCGCCGCAGCTGAAACCGACGTCTCTC 180
Query 60 TCCGTCGCAGATCTAACTCTCTTAACGGAAACAACACTAACGGCGTCGCCATTGACGGAA 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCCGTCGCAGATCTAACTCTCTTAACGGAAACCACACTAACGGCGTCGCCATTGACGGAA 240
Query 120 CCCTAGACAACAACAATCGTCGCATCGGAGATACAAACACTCAAATGGAGATAACTGCTA 179
|||||||||||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||
Sbjct 241 CCCTAGACAACAACAACCGTCGCGTCGGAGATACAAACACTCACATGGATATATCTGCTA 300
Query 180 AGAAAACTGACAACGGCTACGCCAACGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGT 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 AGAAAACTGACAACGGCTACGCCAATGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGT 360
Query 240 CGTTCATGACGTGGACGGCGCGTGACGTTGTGTACGTGGCGAGATACCATTGGATACCGT 299
|||||| |||||||||||||||||| | || ||||||| ||||||||||||||||||||
Sbjct 361 CGTTCACGACGTGGACGGCGCGTGATATCGTCTACGTGGTGAGATACCATTGGATACCGT 420
Query 300 GCATGTTCGCGGCCGGACTTCTGTTCTTCATGGGCGTGGAGTACACGCTTCAGATGATTC 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCATGTTCGCTGCCGGACTTCTGTTCTTCATGGGCGTGGAGTACACGCTTCAGATGATTC 480
Query 360 CCGCGAGATCTGAGCCGTTCGATCTTGGATTTGTGGTCACGCGCTCTTTGAATCGCGTCT 419
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 481 CCGCGAGATCTGAGCCGTTCGATCTTGGGTTTGTGGTCACGCGCTCTTTGAATCGCGTAT 540
Query 420 TAGCATCTTCACCGGATCTTAACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAGCATCTTCACCGGATCTTAACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGA 600
Query 480 TGCAAACAACGTATATTGTATGGACATGGTTAGTGGAAGGACGAGCAAGAGCCACCATCT 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 TGCAAACAACGTATATTGTATGGACATGGTTAGTGGAAGGACGAGCACGAGCCACCATCG 660
Query 540 CGGCTTTATTCATGTTCACGTGTCGCGGCATTCTCGGTTACTCTACTCAGCTTCCTCTCC 599
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 CGGCTTTATTCATGTTCACTTGTCGCGGCATTCTCGGCTACTCTACTCAGCTTCCTCTCC 720
Query 600 CTCAGGATTTTCTAGGATCAGGAGTCGATTTTCCGGTAGGAAATGTCTCTTTCTTCCTCT 659
||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 721 CTCAGGACTTTCTAGGATCAGGGGTTGATTTTCCGGTGGGAAATGTCTCTTTCTTCCTCT 780
Query 660 TCTTCTCGGGCCACGTTGCCGGCTCGATGATCGCATCGTTGGACATGAGGAGAATGCAGA 719
||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 781 TCTTCTCTGGCCATGTCGCCGGCTCGATGATCGCATCATTGGACATGAGAAGAATGCAGA 840
Query 720 GGTTGAGACTTGCGATGGTTTTTGACATCCTCAATGTATTACAGTCGATCAGGCTGCTCG 779
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 841 GGTTGAGACTTGCAATGGTCTTTGACATCCTCAATGTATTACAGTCGATCAGACTGCTCG 900
Query 780 GTACGAGAGGACATTACACGATCGATCTTGCGGTTGGAGTAGGCGCTGGGATTCTCTTTG 839
|||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
Sbjct 901 GTACAAGAGGACATTACACAATCGACCTTGCGGTTGGAGTTGGCGCTGGGATTCTCTTCG 960
Query 840 ACTCATTGGCCGGGAAGTACGAAGAGATGATGAGCAAGAGACATTTAGGCACTGGTTTTA 899
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACTCATTGGCCGGAAAGTACGAAGAGATGATGAGCAAGAGACATTTAGGCACTGGTTTTA 1020
Query 900 GTTTGATTTCGAAAGACTCTCTAGTCAATTAAATTTGTTTTCTATCAGAATGTTTAGTTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GTTTGATTTCGAAAGACTCTCTAGTCAATTAAATTTGTTTTCTATCAGAATGTTTAGTTG 1080
Query 960 AGTTGAATCT 969
||||||||||
Sbjct 1081 AGTTGAATCT 1090
> AT3G15830.1 | Symbols: | phosphatidic acid phosphatase-related
/ PAP2-related | chr3:5354974-5356424 FORWARD LENGTH=988
Length=988
Score = 833 bits (451), Expect = 0.0
Identities = 773/925 (84%), Gaps = 35/925 (4%)
Strand=Plus/Plus
Query 26 ATGACAGCCGCCGCAACTGAAACCGACGTCTCTCTCCGTCGCAGATCTAACT-CTCTTAA 84
||| ||| ||||| ||| |||||| || | |||||||||| | | |||| | || ||||
Sbjct 1 ATGTCAGACGCCGTAACCAAAACCGTCGCCCCTCTCCGTCGTAAAGCTAA-TCCTATTAA 59
Query 85 CGG-AAACAACACTAACGGCGTCGCCATTGACGGAACCCTAGACAACAACAATCGTCGCA 143
||| |||| |||||||||||||| |||| ||||||| | | ||| || ||||||| | |
Sbjct 60 CGGAAAAC-ACACTAACGGCGTCACCATCGACGGAATCTTCGACGACCACAATCGCCAAA 118
Query 144 TCGGA-GATACAAACA-CTCAAATGG-AGATAACTGCTAAGAAAACTGACAACGGCTACG 200
| ||| | | ||| | | ||||||| |||| | |||| ||||||||| | | |
Sbjct 119 TAGGACCA-ATAAATAGC-CAAATGGAAGAT-ATTGCTCAGAAAACTG---A----T--G 166
Query 201 CCAACGGTGTCGGAGGAGGAGGATGGAGAAGCAAAGCGTCGTTCATGACGTGGACGGCGC 260
|| | || |||||||||| ||||| ||||||||||||||| |||||||||||| ||
Sbjct 167 ---AC-G-GT-GGAGGAGGAGAATGGACAAGCAAAGCGTCGTTTATGACGTGGACGATGC 220
Query 261 GTGACGTTGTGTACGTGGCGAGATACCATTGGATACCGTGCATGTTCGCGGCCGGACTTC 320
|||| | | |||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 221 ATGACATAATTTACGTGGCGAGACACCATTGGATACCGTGTTTATTCGCGGCCGGAGTTA 280
Query 321 TGTTCTTCATGGGCGTGGAGTACACGCTT-CAGATGATTCCCGCGAGATCTGAGCCGTTC 379
|||| || | || |||||||||||| || ||||||| ||| ||||| ||| |||||||
Sbjct 281 TGTTTTTTACGGTTGTGGAGTACACG-TTCCAGATGACTCCTGCGAGTTCTCAGCCGTTT 339
Query 380 GATCTTGGATTTGTGGTCACGCGCTCTTTGAATCGCGTCTTAGCATCTTCACCGGATCTT 439
||||| |||||||||| ||| || | | || || || |||| ||||||||||| |||||
Sbjct 340 GATCTAGGATTTGTGGCCACACGTTATCTGCATAGCATCTTGGCATCTTCACCCAATCTT 399
Query 440 AACACTGTTTTAGCCGCACTAAACACGGTGTTCGTAGGGATGCAAACAACGTATATTGTA 499
||||| ||||||||||| |||||||| | || ||||||||||||||||||||||||| |
Sbjct 400 AACACCGTTTTAGCCGCTTTAAACACGATTTTGGTAGGGATGCAAACAACGTATATTGGA 459
Query 500 TGGACATGGTTAGTGGAAGGACGAGCAAGAGCCACCATCTCGGCTTTATTCATGTTCACG 559
|| |||||| ||||||||||||| || | || |||||| |||||||||||||||||||
Sbjct 460 TGTACATGGGCAGTGGAAGGACGACCACGGGCAACCATCGCGGCTTTATTCATGTTCACT 519
Query 560 TGTCGCGGCATTCTCGGTTACTCTACTCAGCTTCCTCTCCCTCAGG-ATTTTCTAGGATC 618
||||| ||||||||||| |||||||||||||| |||| |||||||| ||||| |||||||
Sbjct 520 TGTCGTGGCATTCTCGGCTACTCTACTCAGCTCCCTCGCCCTCAGGAATTTT-TAGGATC 578
Query 619 AGGAGTCGATTTTCCGGTAGGAAATGTCTCTTTCTTCCTCTTCTTCTCGGGCCACGTTGC 678
|||||| |||| |||||| ||||| || || ||||||||||||| ||| || ||||| ||
Sbjct 579 AGGAGTAGATTATCCGGTCGGAAACGTGTCGTTCTTCCTCTTCTACTCAGGTCACGTCGC 638
Query 679 CGGCTCGATGATCGCATCGTTGGACATGAGGAGAATGCAGAGGTTGAGACTTGCGATGGT 738
||| ||||||||||||||||||||||||| ||||||||||||||| || || ||||||||
Sbjct 639 CGGATCGATGATCGCATCGTTGGACATGAAGAGAATGCAGAGGTTTAGGCTGGCGATGGT 698
Query 739 TTTTGACATCCTCAATGTATTACAGTCGATCAGGCTGCTCGGTACGAGAGGACATTACAC 798
||||||||| ||||||||||| || || ||||||||||| |||||||||||||| |||||
Sbjct 699 TTTTGACATTCTCAATGTATTGCAATCCATCAGGCTGCTTGGTACGAGAGGACACTACAC 758
Query 799 GATCGATCTTGCGGTTGGAGTAGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTA 858
||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 759 GATTGATATTGCGGTTGGAGTTGGCGCTGGGATTCTCTTTGACTCATTGGCCGGGAAGTA 818
Query 859 CGAAGAGATGATGAGCAAGAGACATTTA-GGCA--CTGGTTTTAGTTTGATTTCGAAAGA 915
||||||||||| | ||||||||||||| || | || ||| |||||||||||| |||||
Sbjct 819 CGAAGAGATGA-G--CAAGAGACATTTACGGAATACTCGTTGTAGTTTGATTTCAAAAGA 875
Query 916 CTCTCTAGTCAATTAAATTTGTTTT 940
||||||||||| |||||| | ||||
Sbjct 876 CTCTCTAGTCACTTAAATCTATTTT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5