BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929399
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15860.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 754 0.0
> AT3G15860.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: pollen tube; CONTAINS InterPro
DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264);
BEST Arabidopsis thaliana protein match is: Plant self-incompatibility
protein S1 family (TAIR:AT5G26090.1); Has
19 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5361207-5361719
REVERSE LENGTH=513
Length=513
Score = 754 bits (408), Expect = 0.0
Identities = 476/509 (94%), Gaps = 3/509 (1%)
Strand=Plus/Plus
Query 21 atggatcttaacaacaac-a-a-cagcaacattttcaaaacCCTAGCTCGATGGTGTCTT 77
|||||||| ||||||||| | | || |||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGATCTAAACAACAACAAGAGCAACAACATCGTCAAAACCCTAGCTCGATGGTGTCTT 60
Query 78 CTTCTACAAGCCTTCATGATCTCGTCCAAGACCGTGGCTCTGAAGGAACCTGACTACGTA 137
||| ||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 61 CTTTTACAAGCTTTCATGATCTCGTCCAACACCGTGGCTCTTAAGGAACCAGACTACGTA 120
Query 138 AACATGAACATAACAATCCGTAACGCAATGACAGGATTACTCCGACCGGAAATTGTTTAC 197
|||||||||||||||||||||||| ||||||| |||||| |||| |||||||| || ||
Sbjct 121 AACATGAACATAACAATCCGTAACTCAATGACGGGATTAATCCGCCCGGAAATCGTGTAT 180
Query 198 CGATGCCAGTCTAAACACAAAGACTATGGTTGGCATCGATCTACAAAGCCAGGAATCCAA 257
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 181 CGATGCCAATCTAAACGCAAAGACTATGGTTGGCATCGATCTCCAAAGCCAGGAGTCCAA 240
Query 258 TTTTCATTCCCAATCATCCTCATAAAAGGCGAAAACAAAATACCGGCGATTCACATCTGC 317
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 241 TTTTCATTCCCAATCATCCTCATAAAAGGCGAAACCAAAATACCAGCGATTCACATCTGC 300
Query 318 GAATTCCGGTCCGTCTTAGGAACGGCTACACTCGTGATCCAAAACACCCATCTGGACGCC 377
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CAAATCCGGTCCGTGTTAGGAACGGCTACACTCGTGATCCAAAACACCTATCTGGACGCT 360
Query 378 GAGATGTGCCCTAGATCGTCGTGTGCTCACGAGGCAACCCCGAAAGGAATTGTGTTTAGA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGATGTGCCCTAGATCGTCGTGTGCTCACGAGGCAACCCCGAAAGGAATTGTGTTTAGA 420
Query 438 GGCCTTGAATGGGATTTCAGAACCGTATTTCCTAAACTCAAACCAGTTGAGTATCTAGAA 497
|||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGCCTTGAGTGGGATTTCAAAACCGTGTTTCCTAAACTCAAACCAGTTGAGTATCTAGAA 480
Query 498 TTGCCGTGGACACCTTGGCCAAACAGAAC 526
|||||||||||||||||||||||||||||
Sbjct 481 TTGCCGTGGACACCTTGGCCAAACAGAAC 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5