BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929408

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G15960.1 | Symbols:  | mismatched DNA binding;ATP binding | ...   558    1e-158


> AT3G15960.1 | Symbols:  | mismatched DNA binding;ATP binding 
| chr3:5404000-5406461 REVERSE LENGTH=1473
Length=1473

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 331/345 (96%), Gaps = 2/345 (1%)
 Strand=Plus/Plus

Query  1     GTACTAGATTGCTCAAAGAAATGGCCGTGGAGAAGCAGAAAAATGTAGACGCTGAGTTAG  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1130  GTACTAGATTGCTCAAAGAAATGGCCGTGGAGAAGCAGAAAAATGTAGACGCTGAGTTAG  1189

Query  61    CATTAGTCAAGACTTTGGCTGAGAGAGGAGACTTGTTGTACGTGAAAATATTTGCGATCA  120
             ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  1190  CATTAGTCAAGGCTTTGGCTGAGAGAGGAGACATGTTGTACGTGAAAATATTTGCGATCA  1249

Query  121   AGAAACTGGTGTT-GAAACTTGAGGCCGAGAAGGAAGAGGTTGATATGACTTTCGAGAAG  179
             |||||||| | || ||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct  1250  AGAAACTGAT-TTCGAAACTTGAGGCCGAGAAGTATGAGGTTGATATGACTTTCGAAAAG  1308

Query  180   ACGGTTGTGAACCTATCACGCGTTATAGAGGAGGCTTCTCAAGCTTACGAGGAGTATCAT  239
             || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1309  ACAGTTGCGAATCTATCACGCGTTATAGAGGAGGCTTCTCAAGCTTACGAGGAGTATCAT  1368

Query  240   GTGGTTATGCGTAAGTGGAAAGAGGAACAAGCATCTGAGGAATTCTCGCGTGAGGCCATT  299
             |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1369  GTGGTCGTGCGTAAGTGGAAAGAGGAACAAGCATCTGAGGAATTCTCGCGTGAGGCCATT  1428

Query  300   GAGAGGGTAGAGATGGTTTGGGTTGAGTTTCTCGGCACTCTCTAG  344
             ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1429  GAGAGGGTAGAGATGGTTTGGGTTGAGTTTCTCAGCACTCTCTAG  1473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5