BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929417
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16040.1 | Symbols: | Translation machinery associated TMA7... 394 2e-109
> AT3G16040.1 | Symbols: | Translation machinery associated TMA7
| chr3:5443091-5443952 FORWARD LENGTH=448
Length=448
Score = 394 bits (213), Expect = 2e-109
Identities = 230/238 (97%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 CCCTAACCCTAAAATTCAGCCATGTCGTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 91 CCCTAACCCTAAAATTCAGCCATGTCTTCCAAGCAAGGAGGGAAATTGAAGCCTTTGAAG 150
Query 61 CAGCCTAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 CAGCCCAAGTCTGGTAAGAAGGAGTACGATGAGCACGATATGGAGTTAATGCAGAAAAAG 210
Query 121 AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAGGGATCATTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 211 AAGGATGAAGAGAAGGCACTTAAAGAACTCAGGGCCAAGGCTTCACAAAAAGGATCATTC 270
Query 181 GGAGGCACAGGACTTAAGAAGAGTGGAAAGAAATAAGACTAA-TCTGCCTCAAATGTA 237
|||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| ||||
Sbjct 271 GGAGGCTCAGGACTTAAGAAAAGTGGGAAGAAATAAGACTAAATCTGCCTCAA-TGTA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5