BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929419
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16060.1 | Symbols: | ATP binding microtubule motor family ... 3428 0.0
AT3G51150.2 | Symbols: | ATP binding microtubule motor family ... 54.7 4e-06
AT5G66310.1 | Symbols: | ATP binding microtubule motor family ... 52.8 1e-05
> AT3G16060.1 | Symbols: | ATP binding microtubule motor family
protein | chr3:5447343-5451527 FORWARD LENGTH=2546
Length=2546
Score = 3428 bits (1856), Expect = 0.0
Identities = 2033/2116 (96%), Gaps = 21/2116 (1%)
Strand=Plus/Plus
Query 1 CTCCGATTCGAGCTAGAGGC---AATGAACGGAAGACAGAGATCTGGCGCAGCGGCGGTG 57
|||||||||||||||||| | ||||| ||||||||||||||||| ||||||||||||
Sbjct 137 CTCCGATTCGAGCTAGAGTCAATAATGAGCGGAAGACAGAGATCTGTTGCAGCGGCGGTG 196
Query 58 CACCACCAGAGACAGCTTTCCGATAACCCTCTCGACATGTCTTCCTCCAATGGCCGATGG 117
|| |||||||| ||||| ||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 197 CATCACCAGAGGCAGCTCTCCGATAACCCTCTCGATATGTCTTCATCCAATGGCAGATGG 256
Query 118 CTTCAATCTACTGGTCTTCAGCATTTTCAGTCATCCGCCAATGATTATGGATACTATGCT 177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CTTCAATCCACTGGTCTTCAGCATTTTCAGTCATCCGCCAATGATTATGGATACTATGCT 316
Query 178 GGTGGACAAGGA---GGTGGTCAAGCAGCAAGAGGTTACCAGAATGCTCAGAGAGGGTTT 234
||||| |||||| |||||||||||||||||||| ||||||||||||| ||| |
Sbjct 317 GGTGGGCAAGGAGGTGGTGGTCAAGCAGCAAGAGGATACCAGAATGCTC--AGA--G--- 369
Query 235 AATGGAGGGAATGAGTTTTTTGGGGAACAACCAACTACTCCTCAATACGGTGCTCGTCCA 294
| ||| || ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 370 -A-GGA---AACGAGTTCTTTGGGG---AACCAACTACTCCTCAATACGGTGCTCGTCCT 421
Query 295 ACGAACCAAAGGAAGAACAATGATGAATCTGAGTTTAGTCCTGGGCTCTTAGATCTGCAT 354
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACCAACCAAAGGAAGAACAATGATGAATCTGAGTTTAGTCCTGGGCTCTTAGATCTGCAT 481
Query 355 TCTTTTGATACTGAGCTTCTTCCTGAGATTCCAGTCTCTAGCCAAGTAGATGGCCCCTCA 414
|||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||
Sbjct 482 TCTTTTGATACTGAGCTTCTTCCTGAGATTCCAGTCTCTAACCAATTGGATGGTCCCTCA 541
Query 415 CTTTTCAATCCTAGTCAAGGCCAAAGCTTTGATGACTTTGAAGCTTACAACAAGCAGCCT 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 542 CTTTTCAATCCTAGTCAAGGTCAAAGCTTTGATGACTTTGAAGCTTACAACAAGCAGCCT 601
Query 475 AACCGTAGTCGCGTGTTGGCTGAAAACTTGGCTGCTGAGAAGGAGAGGATGAATGCTGTT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AACCGTAGTCGCGTGTTGGCTGAAAACTTGGCTGCTGAGAAGGAGAGGATGAATGCTGTT 661
Query 535 GCAAAGATTAAAGTCGTTGTGCGTAAGCGACCACTTAACAAAAAGGAGTCGACAAAAAAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GCAAAGATTAAAGTCGTTGTGCGTAAGCGACCACTTAACAAAAAGGAGTCGACAAAAAAC 721
Query 595 GAGGAAGACATTGTTGACACCCATGCCAATTGCTTAACAGTTCATGAAACTAAACTTAAG 654
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GAGGAAGATATTGTTGACACCCATGCCAATTGCTTAACAGTTCATGAAACTAAACTTAAG 781
Query 655 GTTGACTTAACAGCTTATGTTGAAAAGCATGAATTTGTGTTTGATGCCGTGCTAGATGAG 714
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTCGACTTAACAGCTTATGTTGAAAAGCATGAATTTGTGTTTGATGCCGTGCTAGATGAG 841
Query 715 GAAGTATCAAATGATGAGGTATATCGTGAGACTGTGGAGCCTGTAGTCCCCCTAATATTT 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 842 GAAGTATCAAATGATGAGGTATATCGTGAGACTGTGGAGCCTGTAGTCCCCCTAATTTTT 901
Query 775 CAGCGCATCAAAGCCACTTGCTTTGCATATGGGCAAACAGGTAGTGGTAAAACCTATACT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CAGCGCATCAAAGCCACTTGCTTTGCATATGGGCAAACAGGTAGTGGTAAAACCTATACT 961
Query 835 ATGAAGCCTTTGCCTCTTAAGGCTTCAAGGGACATTTTGAGGTTGATGCACCACACATAC 894
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 962 ATGAAGCCTTTGCCTCTTAAGGCTTCAAGGGACATCCTGCGGTTGATGCACCACACATAC 1021
Query 895 AGAAACCAAGGGTTTCAGTTGTTTGTTAGCTTCTTTGAGATTTATGGAGGAAAGCTGTAT 954
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1022 AGAAATCAAGGGTTTCAGTTGTTTGTCAGCTTCTTTGAGATTTATGGAGGAAAGCTATAT 1081
Query 955 GATCTCCTCAGTGAGAGGAAGAAGCTGTGCATGAGAGAGGATGGTAAGCAGCAAGTGTGC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GATCTCCTCAGTGAGAGGAAGAAGCTGTGCATGAGAGAGGATGGTAAGCAGCAAGTGTGC 1141
Query 1015 ATCGTTGGTTTACAAGAGTACAGAGTATCTGATACAGATGCTATTATGGAGCTTATTGAG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ATCGTTGGTTTACAAGAGTACAGAGTATCTGATACAGATGCTATTATGGAGCTTATTGAG 1201
Query 1075 AGAGGAAGTGCAACAAGAAGTACTGGAACCACTGGTGCAAATGAAGAATCCTCTCGTTCA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGAGGAAGTGCAACAAGAAGTACTGGAACCACTGGTGCAAATGAAGAATCCTCTCGTTCA 1261
Query 1135 CATGCTATACTACAGCTCGCAATCAAAAAATCAGTAGAGGGAAATCAGTCAAAGCCCCCT 1194
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1262 CATGCTATACTACAGCTCGCGATAAAAAAATCAGTAGAGGGAAATCAGTCAAAGCCCCCT 1321
Query 1195 CGCCTCGTTGGCAAGCTTTCTTTCATTGATCTTGCTGGAAGTGAACGTGGTGCAGATACA 1254
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CGCCTTGTTGGCAAGCTTTCTTTCATTGATCTTGCTGGAAGTGAACGTGGTGCAGATACA 1381
Query 1255 ACAGACAATGACAAGCAGACAAGATTGGAAGGAGCAGAGATCAATAAGAGCTTACTCGCC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 ACAGACAATGACAAGCAGACAAGATTGGAAGGAGCAGAGATCAATAAGAGCTTACTCGCC 1441
Query 1315 TTAAAGGAATGCATCAGAGCTCTGGATAATGATCAAGGTCACATCCCTTTTAGAGGCAGT 1374
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1442 TTAAAGGAATGCATTAGAGCTCTGGATAATGACCAAGGTCATATCCCTTTTAGAGGCAGT 1501
Query 1375 AAGTTAACCGAAGTTCTTAGGGACTCATTCATGGGAAATTCTCGTACTGTAATGATATCA 1434
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1502 AAGTTAACTGAAGTTCTCAGGGACTCCTTCATGGGAAATTCTCGTACTGTAATGATATCG 1561
Query 1435 TGCATATCTCCAAGCTCTGGATCATGTGAGCACACCCTTAACACCTTAAGATATGCGGAC 1494
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1562 TGCATATCTCCAAGCTCTGGATCATGTGAGCACACCCTGAACACCCTAAGATATGCGGAC 1621
Query 1495 AGGGTTAAGAGTCTCTCAAAGGGAAACGCCTCTAAGAAAGATGTATCTTCTTCGTCCATG 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1622 AGGGTTAAGAGTCTCTCAAAGGGAAACGCCTCTAAGAAAGATGTATCTTCTTCGACCATG 1681
Query 1555 AACCTAAGGGAGTCCACAAAAATTCCTTTGTCTTCTGCACTTCCAACTCCATCTAACTAT 1614
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1682 AACTTAAGGGAGTCCACGAAAATTCCTTTGTCTTCTGCACTTCCAACTCCATCTAACTTT 1741
Query 1615 GATGATGACGTGAATGAGATGTGGACTGAAGAGAACGATGAATTTGATGCATCGGATTAT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 GATGATGACGTGAATGAGATGTGGACTGAAGAGAACGATGAATTTGATGCATCGGATTAT 1801
Query 1675 GAGCAAGATAAACAAATGTGGAAGAAAAACGGGAAGCTAGAGCCATCCTATAACGGTATG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GAGCAAGATAAACAAATGTGGAAGAAAAACGGGAAGCTAGAGCCATCCTATAACGGTATG 1861
Query 1735 GCACAGGAGAGAATCCCAAAACCTATTATTCAGATGAAGTCAAGAGACATGCCAAGGCCC 1794
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1862 GCACAGGAGAGAATCCCGAAACCTACTATTCAGATGAAGTCACGAGACATGCCAAGGCCC 1921
Query 1795 GATATGAAGAAGTCAAACTCCGATGACAATCTAAATGCACTTCTGCAGGAAGAAGAAGAC 1854
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1922 GATATGAAGAAGTCAAACTCTGATGACAATCTAAATGCGCTTCTGCAGGAAGAAGAAGAC 1981
Query 1855 CTTGTGAATGCACACCGTAAACAAGTTGAGGATACGATGAACATTGTGAAAGAGGAGATG 1914
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1982 CTTGTGAATGCACACCGTAAACAAGTTGAGGATACCATGAACATAGTGAAAGAGGAGATG 2041
Query 1915 AACTTACTGGTTGAAGCGGACCAACCTGGAAACCAGCTAGATGGTTACATTTCAAGACTG 1974
||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2042 AACTTGCTGGTTGAGGCAGACCAACCCGGAAACCAGCTAGATGGTTACATTTCAAGACTG 2101
Query 1975 AACACAATTCTATCTCAGAAGGCTGCAGGTATACTCCAACTACAGAACCGTCTTGCTCAT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2102 AACACAATTCTATCTCAGAAGGCTGCAGGTATACTCCAACTACAGAACCGTCTTGCTCAT 2161
Query 2035 TTCCAGAAACGCCTTAGAGAGCACAACGTATTGGTATCTACCACTGGGTACTGACCTATA 2094
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 2162 TTCCAGAAACGCCTTAGAGAGCACAATGTATTAGTCTCTACCACTGGGTACTGACCTATA 2221
Query 2095 ATCACTCTCTCGAGTA 2110
| ||||||||||||||
Sbjct 2222 ACCACTCTCTCGAGTA 2237
> AT3G51150.2 | Symbols: | ATP binding microtubule motor family
protein | chr3:19000856-19006769 FORWARD LENGTH=3785
Length=3785
Score = 54.7 bits (29), Expect = 4e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1215 TTTCATTGATCTTGCTGGAAGTGAACGTG 1243
|||||||||||||||||||||||||||||
Sbjct 1089 TTTCATTGATCTTGCTGGAAGTGAACGTG 1117
> AT5G66310.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:26485685-26491382 REVERSE LENGTH=3740
Length=3740
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1216 TTCATTGATCTTGCTGGAAGTGAACGTG 1243
||||||||||||||||||||||||||||
Sbjct 1180 TTCATTGATCTTGCTGGAAGTGAACGTG 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104617935780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5